BQ623890
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUMB (Tryptophan synthase beta chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
K G +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L
Sbjct: 329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402 HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct: 303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUC2 (Tryptophan synthase beta chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
K G +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L
Sbjct: 329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402 HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct: 303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUAB (Tryptophan synthase beta chain OS=Brucella abortus GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
K G +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L
Sbjct: 329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402 HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct: 303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA2 (Tryptophan synthase beta chain OS=Brucella abortus (strain 2308) GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
K G +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L
Sbjct: 329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402 HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct: 303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA1 (Tryptophan synthase beta chain OS=Brucella abortus (strain S19) GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
K G +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L
Sbjct: 329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402 HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct: 303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BORPD (Tryptophan synthase beta chain OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.800e-25 Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
K G +Y +TDDEAL AF R+EGI+PALE++HA+A K+ PTL T ++VN SGRGDKD+ T
Sbjct: 322 KDSGRAQYVGITDDEALAAFHDCCRIEGIMPALESSHAIAQAVKMAPTLPKDTIILVNLSGRGDKDMHT 390 HSP 2 Score: 59.3066 bits (142), Expect = 1.800e-25 Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
DGQ+ E HS+SAGLDYPGVGPEH++LKD GRA
Sbjct: 296 DGQVQETHSVSAGLDYPGVGPEHAWLKDSGRA 327
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_RHOFD (Tryptophan synthase beta chain OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpB PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.339e-25 Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 3
Query: 81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
F K G EY +TD EAL AF R EGIIPALE++HA+AY KL T+ ++VN SGRGDKD+ T
Sbjct: 326 FLKDIGRAEYVGITDQEALAAFHYLCRTEGIIPALESSHAVAYAMKLAKTMRPDQSILVNLSGRGDKDIGT 396 HSP 2 Score: 62.3882 bits (150), Expect = 2.339e-25 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D++GQ+ E HSISAGLDYPGVGPEH+FLKD GRA
Sbjct: 300 DDNGQVTETHSISAGLDYPGVGPEHAFLKDIGRA 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_MYCTU (Tryptophan synthase beta chain OS=Mycobacterium tuberculosis GN=trpB PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.340e-25 Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 305
K G +Y +TD EA++AF R+EGIIPA+E+AHA+A KL L G +VVN SGRGDKDV+TA K+
Sbjct: 343 KEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415 HSP 2 Score: 61.6178 bits (148), Expect = 2.340e-25 Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DEDGQ IE HSISAGLDYPGVGPEH++LK+ GR
Sbjct: 315 DEDGQTIESHSISAGLDYPGVGPEHAWLKEAGR 347
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_MYCBO (Tryptophan synthase beta chain OS=Mycobacterium bovis GN=trpB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.340e-25 Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 305
K G +Y +TD EA++AF R+EGIIPA+E+AHA+A KL L G +VVN SGRGDKDV+TA K+
Sbjct: 343 KEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415 HSP 2 Score: 61.6178 bits (148), Expect = 2.340e-25 Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
DEDGQ IE HSISAGLDYPGVGPEH++LK+ GR
Sbjct: 315 DEDGQTIESHSISAGLDYPGVGPEHAWLKEAGR 347
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_AZOVD (Tryptophan synthase beta chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.342e-25 Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 3
Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
EY ++TD EAL+AF RLEGIIPALE++HALA + K P L +VVN SGRGDKD+QT + ++Q
Sbjct: 331 EYSSITDHEALQAFHTCCRLEGIIPALESSHALAEVFKRAPRLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399 HSP 2 Score: 58.151 bits (139), Expect = 2.342e-25 Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
D DGQII+ HSISAGLDYPG+GPEH++L D GR
Sbjct: 297 DADGQIIDAHSISAGLDYPGIGPEHAWLHDIGR 329 The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 410
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bpback to top |