BQ623890
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BORBR (Tryptophan synthase beta chain OS=Bordetella bronchiseptica GN=trpB PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.968e-25 Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
K G EY +TDDEAL AF R+EGI+PALE+AHA+A K+ P L+ ++VN SGRGDKD+ T
Sbjct: 322 KDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVKMAPALSKDKVILVNLSGRGDKDMHT 390 HSP 2 Score: 59.3066 bits (142), Expect = 3.968e-25 Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
DGQ+ E HS+SAGLDYPGVGPEH++LKD GRA
Sbjct: 296 DGQVQETHSVSAGLDYPGVGPEHAWLKDSGRA 327
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BORPE (Tryptophan synthase beta chain OS=Bordetella pertussis GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.164e-25 Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
K G EY +TDDEAL AF R+EGI+PALE+AHA+A K+ P L+ ++VN SGRGDKD+ T
Sbjct: 322 KDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVKMTPALSKDKVILVNLSGRGDKDMHT 390 HSP 2 Score: 59.3066 bits (142), Expect = 5.164e-25 Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 2
Query: 8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
DGQ+ E HS+SAGLDYPGVGPEH++LKD GRA
Sbjct: 296 DGQVQETHSVSAGLDYPGVGPEHAWLKDSGRA 327
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_RHOS4 (Tryptophan synthase beta chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=trpB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.718e-25 Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 3
Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
G EY ++TD EALEAF+ LEGIIPALE +HALA++ K+ PTL +V+N GRGDKD+ T K+L
Sbjct: 333 GRAEYVSITDAEALEAFQLCCALEGIIPALEPSHALAHVIKIAPTLPRDHIIVMNMCGRGDKDIFTVAKHL 403 HSP 2 Score: 56.9954 bits (136), Expect = 6.718e-25 Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D DGQI+E SISAGLDYPG+GPEH++L D GRA
Sbjct: 302 DADGQILEGFSISAGLDYPGIGPEHAWLHDTGRA 335
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK5 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpB PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.722e-25 Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 3
Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
EY VTD EAL+AF SR EGIIPALE++HALAY KL P L+ VVVN SGRGDKDV T
Sbjct: 326 EYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDT 388 HSP 2 Score: 55.4546 bits (132), Expect = 6.722e-25 Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D++GQI+ +S+SAGLDYPGVGPEH++LKD RA
Sbjct: 292 DDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRA 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK1 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpB PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.722e-25 Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 3
Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
EY VTD EAL+AF SR EGIIPALE++HALAY KL P L+ VVVN SGRGDKDV T
Sbjct: 326 EYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDT 388 HSP 2 Score: 55.4546 bits (132), Expect = 6.722e-25 Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D++GQI+ +S+SAGLDYPGVGPEH++LKD RA
Sbjct: 292 DDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRA 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_ACICJ (Tryptophan synthase beta chain OS=Acidiphilium cryptum (strain JF-5) GN=trpB PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.745e-25 Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3
Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
EY + TDDEAL AF+ R EGIIPALE +HALA++ K+ P + + +++N GRGDKD+ T ++L
Sbjct: 333 EYVSATDDEALAAFQLCCRTEGIIPALEPSHALAHVAKIAPGMDKESIILMNLCGRGDKDIFTVARHL 400 HSP 2 Score: 61.6178 bits (148), Expect = 8.745e-25 Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
D+DGQI+E HSISAGLDYPG+GPEHS+L D GR
Sbjct: 299 DDDGQILEAHSISAGLDYPGIGPEHSYLHDIGR 331
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACWK (Tryptophan synthase beta chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 8.748e-25 Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = 3
Query: 108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
Y+++TD+EALEAF+ ++ EGIIPALE++HA+AY KL P + +V+ SGRGDKDV++ +Y++
Sbjct: 328 YHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395 HSP 2 Score: 58.9214 bits (141), Expect = 8.748e-25 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
+E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct: 293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 8.748e-25 Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = 3
Query: 108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
Y+++TD+EALEAF+ ++ EGIIPALE++HA+AY KL P + +V+ SGRGDKDV++ +Y++
Sbjct: 328 YHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395 HSP 2 Score: 58.9214 bits (141), Expect = 8.748e-25 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
+E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct: 293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 8.748e-25 Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = 3
Query: 108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
Y+++TD+EALEAF+ ++ EGIIPALE++HA+AY KL P + +V+ SGRGDKDV++ +Y++
Sbjct: 328 YHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395 HSP 2 Score: 58.9214 bits (141), Expect = 8.748e-25 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
+E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct: 293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.752e-25 Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 302
K G EY VTD+EAL AF SR EGIIPALE+AHA+AY KL ++ ++VN SGRGDKD+ +K
Sbjct: 312 KESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLK 383 HSP 2 Score: 56.6102 bits (135), Expect = 8.752e-25 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
DE+GQI HSI+ GLDYPGVGPEH++LK+ GRA
Sbjct: 284 DEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRA 317 The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 410
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bpback to top |