BQ623890
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_LEPCP (Tryptophan synthase beta chain OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=trpB PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.137e-24 Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 3
Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
G EY +TD EAL+AF R EGIIPALE++HA+AY KL T+ V+VN SGRGDKD+ T
Sbjct: 325 GRAEYVGITDAEALQAFHYLCRAEGIIPALESSHAVAYAMKLAKTMRPDQHVLVNLSGRGDKDIGT 390 HSP 2 Score: 60.077 bits (144), Expect = 1.137e-24 Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D +GQI E HS+SAGLDYPGVGPEH++LKD GRA
Sbjct: 294 DANGQITETHSVSAGLDYPGVGPEHAYLKDIGRA 327
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.139e-24 Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
K K Y VTD EAL+AF S EGIIPALE++HA+AY KL P+L+ V++N SGRGDKDV T +K ++
Sbjct: 314 KEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVAYAMKLAPSLSKDEIVIINLSGRGDKDVNTVMKNME 388 HSP 2 Score: 56.6102 bits (135), Expect = 1.139e-24 Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
DEDGQI +S+SAGLDYPGVGP+HS+LK++ RA
Sbjct: 286 DEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERA 319
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.482e-24 Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
K G Y + +D EALEAFK + EGIIPALE++HALAY KL + + +VVN SGRGDKD+ T L+
Sbjct: 315 KESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYNALK 389 HSP 2 Score: 62.7734 bits (151), Expect = 1.482e-24 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D++GQI E HSISAGLDYPGVGPEHS+LK+ GRA
Sbjct: 287 DDEGQIAESHSISAGLDYPGVGPEHSYLKESGRA 320
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_SILPO (Tryptophan synthase beta chain OS=Silicibacter pomeroyi GN=trpB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.926e-24 Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
G +Y ++TD EALEAFK EGIIPALE +HALA++ KL P L +++N GRGDKD+ T K+L
Sbjct: 332 GRAKYVSITDMEALEAFKLCCATEGIIPALEPSHALAHVMKLAPELPKDHIIIMNMCGRGDKDIFTVAKFL 402 HSP 2 Score: 58.5362 bits (140), Expect = 1.926e-24 Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D+DGQI+E +SISAGLDYPG+GPEHS+L + GRA
Sbjct: 301 DDDGQILEGYSISAGLDYPGIGPEHSWLHEVGRA 334
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSESH (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola GN=trpB PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.927e-24 Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
EY ++TDDEAL+AF + LEGIIPALETAHALA K L D +VV SGRGDKD+QT + ++
Sbjct: 331 EYVSITDDEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398 HSP 2 Score: 56.6102 bits (135), Expect = 1.927e-24 Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
D DGQI +PHSISAGLDYPG+GPEH+FL + R
Sbjct: 297 DGDGQITDPHSISAGLDYPGIGPEHAFLHEVKR 329
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_CLAM3 (Tryptophan synthase beta chain OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.508e-24 Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 3
Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
G Y VTDD+A+ A + SR EGIIPA+E+AHALA +L L + +++N SGRGDKD++TA KY +
Sbjct: 324 GRASYRPVTDDQAMSALRLLSRTEGIIPAIESAHALAGALELGKELGPDSIILINLSGRGDKDMETAGKYFDL 396 HSP 2 Score: 62.003 bits (149), Expect = 2.508e-24 Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
DEDGQ I+ HSISAGLDYPGVGPEHS+L D GRA
Sbjct: 293 DEDGQTIDSHSISAGLDYPGVGPEHSWLSDLGRA 326
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.509e-24 Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 3
Query: 108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
Y+++TDDEALEAF+ ++ EGIIPALE++HA+AY KL + +V+ SGRGDKDV++ +Y++
Sbjct: 328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAAQMKKDEGLVICLSGRGDKDVESIKRYME 395 HSP 2 Score: 58.9214 bits (141), Expect = 2.509e-24 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
+E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct: 293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.261e-24 Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 305
K G EY VTDD A++A + SR EGIIPA+E+AHALA ++ L ++VN SGRGDKD+ TA +Y
Sbjct: 330 KDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEIGKELGKDGLILVNLSGRGDKDMDTAARY 402 HSP 2 Score: 62.003 bits (149), Expect = 3.261e-24 Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
D++GQI EP+SISAGLDYPG+GPEH++LKD GR
Sbjct: 302 DDEGQITEPYSISAGLDYPGIGPEHAYLKDSGR 334
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_SILST (Tryptophan synthase beta chain OS=Silicibacter sp. (strain TM1040) GN=trpB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.262e-24 Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3
Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
G +Y ++TD EALEAF+ S +EGIIPALE +HALA++ K+ P L +V+N GRGDKD+ T ++L
Sbjct: 334 GRAQYVSITDKEALEAFQLSCAMEGIIPALEPSHALAHVTKIAPELPKDHIIVMNMCGRGDKDIFTVARHL 404 HSP 2 Score: 56.6102 bits (135), Expect = 3.262e-24 Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
D+DGQI+E SISAGLDYPG+GPEH++L + GRA
Sbjct: 303 DDDGQILEGFSISAGLDYPGIGPEHAWLHETGRA 336
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_MESSB (Tryptophan synthase beta chain OS=Mesorhizobium sp. (strain BNC1) GN=trpB PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.264e-24 Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 3
Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
K G EY + D EALEAF+ +RLEGIIPALE +HALA + K P + +V+N SGRGDKD+ K+L++
Sbjct: 329 KEAGRVEYVPIMDHEALEAFQLLTRLEGIIPALEPSHALAEVIKRAPKMGKDQIIVMNLSGRGDKDIFAVAKHLKM 404 HSP 2 Score: 59.3066 bits (142), Expect = 3.264e-24 Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
D DGQI E HSISAGLDYPG+GPEHS+LK+ GR
Sbjct: 301 DSDGQIKEGHSISAGLDYPGIGPEHSWLKEAGR 333 The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 410
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bpback to top |