BQ624119

Overview
NameBQ624119
Unique NameBQ624119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVG N KSLGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVG N KSLGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG N K+LGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 3
Query:  312 STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            STDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G N KSLGRAGSKCWLGKRPVV
Sbjct:  131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVV 219          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.298e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG N K+LGRAGSKCWLGKRP+V
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.298e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG N K+LGRAGSKCWLGKRP+V
Sbjct:  132 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIV 219          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.298e-42
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G N KSLGRAGSKCWLGKRPVV
Sbjct:  134 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVV 221          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.298e-42
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G N KSLGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.225e-42
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT GQVGNVG N KSLGRAGSKCWLGKRPVV
Sbjct:  137 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATFGQVGNVGVNQKSLGRAGSKCWLGKRPVV 224          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.225e-42
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI KNCSATVGQVGNVG N KSLGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVV 218          
The following BLAST results are available for this feature:
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2B_LIRTU4.822e-4296.5950S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RK2B_CHLSC4.822e-4296.5950S ribosomal protein L2-B, chloroplastic OS=Chlor... [more]
RK2A_SOYBN4.822e-4296.5950S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]
RK2A_POPAL4.822e-4295.5150S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RK2_PHAVU6.298e-4295.4550S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAN6.298e-4295.4550S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_MANES6.298e-4296.5950S ribosomal protein L2, chloroplastic OS=Manihot... [more]
RK2_CUCSA6.298e-4296.5950S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2_PLAOC8.225e-4296.5950S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_MORIN8.225e-4296.5950S ribosomal protein L2, chloroplastic OS=Morus i... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01210 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624119 ID=BQ624119; Name=BQ624119; organism=Citrus sinensis; type=EST; length=580bp
ATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCT
ACATGAAGAACATAAGCCAGATGACGGAACGGGAAGACCTAGGATGTAGA
AGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTC
ATGTGGTACTTCATTATATGATATTGTGGTACTTCATTATATGATATATA
TAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGC
TTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAG
ATGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATA
GAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGT
AGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTT
CTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAA
GTGGGGAATGTTGGGGCGAACCACAAAAGTTTGGGTAGAGCCGGATCTAA
ATGTTGGCTAGGGAAGCGTCCTGTAGTAAG
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