BQ624119

Overview
NameBQ624119
Unique NameBQ624119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            ++P+G+ IH IE+  GKG QLAR+AG+ A+L+A+EG  + ++L SGE+R I  NC AT+G+VGN   N +S+G+AG+  W G RP V
Sbjct:  134 NIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAREGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRWRGIRPTV 220          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_METEP (50S ribosomal protein L2 OS=Methylobacterium extorquens (strain PA1) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  243 PYALEEACTVWEGVLIDQKDESTST--DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            P  L     V  G  +D K  + +    MP+GT +HN+E+ +GKGG +AR+AG  A+++ ++    TL+L SGE RL+   C ATVG V N    + SLG+AG   WLGKRP V
Sbjct:  108 PQRLSPGDKVIAGESVDVKPGNAAPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGRDQGYVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAGRNRWLGKRPHV 221          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_METC4 (50S ribosomal protein L2 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  243 PYALEEACTVWEGVLIDQKDESTST--DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            P  L     V  G  +D K  + +    MP+GT +HN+E+ +GKGG +AR+AG  A+++ ++    TL+L SGE RL+   C ATVG V N    + SLG+AG   WLGKRP V
Sbjct:  108 PQRLSPGDKVIAGESVDVKPGNAAPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGRDQGYVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAGRNRWLGKRPHV 221          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_MARAV (50S ribosomal protein L2 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            ++P+G+ IH +E+  GKG QLAR+AGA  +L+A+EG  AT++L SGE+R +  +C AT+G+V N   + K LG+AG+  W GKRP V
Sbjct:  134 NIPVGSVIHCVELKPGKGAQLARSAGASVQLVAREGAYATIRLRSGEMRKVLVDCRATLGEVSNSEHSLKQLGKAGASRWRGKRPTV 220          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_LACH4 (50S ribosomal protein L2 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRP 572
            ++P GT+IHNIE+  GKGGQL R+AGA A+++  +G    ++L SGEVR I  +C AT+G VGN   +   LG+AG K WLGKRP
Sbjct:  134 NIPSGTSIHNIELKPGKGGQLVRSAGASAQVLGVDGDYTLVRLQSGEVRKILSSCRATIGVVGNEQHSLIKLGKAGRKRWLGKRP 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_JANSC (50S ribosomal protein L2 OS=Jannaschia sp. (strain CCS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  321 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            +P+GT +HNIE+  GKGGQ+ARAAG  A+ + ++G  A ++L SGE+RL+ + C ATVG V N   ++++LG+AG    +GKRP V
Sbjct:  135 LPIGTIVHNIELKPGKGGQIARAAGTYAQFVGRDGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRVRHMGKRPSV 220          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_BUCAP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            ++P+G+ IHN+E+  GKGGQ+AR+AG+  +L+A + + ATL+L SGE+R    NC AT+G+VGN     K LG+AG+  W+G RP V
Sbjct:  134 NIPVGSFIHNVEMRPGKGGQIARSAGSYVQLVACDKEYATLRLRSGEMRKTESNCRATIGEVGNSEHMLKVLGKAGASRWIGIRPTV 220          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_ACIC1 (50S ribosomal protein L2 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            ++P+GT +H IE+  G G ++AR+AGA  +L+AKEG  A L++PSGE+R +   C ATVG+VGN   ++ S G+AG   W GKRP V
Sbjct:  135 NIPVGTVVHAIELRPGGGAKIARSAGASVQLVAKEGMYAQLRMPSGEIRNVDIRCRATVGEVGNAEQSNISWGKAGRMRWKGKRPSV 221          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_THELT (50S ribosomal protein L2 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            ++PLGT +HN+EI  G GG++AR+AG   +L+AKEG  A L++PSGE+R +   C AT+G VGN    ++  G+AG   W+G++P V
Sbjct:  134 NIPLGTLLHNVEIRPGSGGKIARSAGVSCQLMAKEGNYALLRMPSGELRKVHIKCYATIGVVGNEDHKNEVFGKAGRTRWIGRKPHV 220          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RL2_THEAB (50S ribosomal protein L2 OS=Thermosipho africanus (strain TCF52B) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  318 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            ++P+GT +HN+E   GKGGQ+AR+AG   +L+AKEGK A L++PSGE+R +   C AT+G VGN    ++  G+AG   W G++P V
Sbjct:  134 NIPVGTIVHNVEFIPGKGGQIARSAGTSCQLMAKEGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRKPHV 220          
The following BLAST results are available for this feature:
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NITEC3.718e-1850.5750S ribosomal protein L2 OS=Nitrosomonas eutropha ... [more]
RL2_METEP3.718e-1842.9850S ribosomal protein L2 OS=Methylobacterium extor... [more]
RL2_METC43.718e-1842.9850S ribosomal protein L2 OS=Methylobacterium chlor... [more]
RL2_MARAV3.718e-1849.4350S ribosomal protein L2 OS=Marinobacter aquaeolei... [more]
RL2_LACH43.718e-1852.9450S ribosomal protein L2 OS=Lactobacillus helvetic... [more]
RL2_JANSC3.718e-1848.8450S ribosomal protein L2 OS=Jannaschia sp. (strain... [more]
RL2_BUCAP3.718e-1849.4350S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_ACIC13.718e-1849.4350S ribosomal protein L2 OS=Acidothermus celluloly... [more]
RL2_THELT4.856e-1847.1350S ribosomal protein L2 OS=Thermotoga lettingae (... [more]
RL2_THEAB4.856e-1848.2850S ribosomal protein L2 OS=Thermosipho africanus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01210 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624119 ID=BQ624119; Name=BQ624119; organism=Citrus sinensis; type=EST; length=580bp
ATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCT
ACATGAAGAACATAAGCCAGATGACGGAACGGGAAGACCTAGGATGTAGA
AGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTC
ATGTGGTACTTCATTATATGATATTGTGGTACTTCATTATATGATATATA
TAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGC
TTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAG
ATGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATA
GAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGT
AGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTT
CTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAA
GTGGGGAATGTTGGGGCGAACCACAAAAGTTTGGGTAGAGCCGGATCTAA
ATGTTGGCTAGGGAAGCGTCCTGTAGTAAG
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