BQ624119

Overview
NameBQ624119
Unique NameBQ624119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.517e-39
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  321 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG N KSLGRAGSK WLGKRPVV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVV 217          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.517e-39
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  321 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG N KSLGRAGSK WLGKRPVV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVV 217          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.517e-39
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  321 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG N KSLGRAGSK WLGKRPVV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVV 217          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.517e-39
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  321 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG N KSLGRAGSK WLGKRPVV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVV 217          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.517e-39
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  321 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG N KSLGRAGSK WLGKRPVV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVV 217          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.511e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            T+MPLGTAIHN+EIT GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG N KSLGRAG++ WLGKRPVV
Sbjct:  131 TEMPLGTAIHNLEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAQRWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.234e-38
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            T++PLGTAIHNIEITLGKGGQLARAAGAVAKLI+KEGKSA +KLPSGEVRLIS+NCSATVGQVGNVG N KSLGRAGSK WLGKRPVV
Sbjct:  131 TNIPLGTAIHNIEITLGKGGQLARAAGAVAKLISKEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGSKRWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.234e-38
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            T+MPLGTAIHN+EIT GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISK+CSATVGQVGNVG N KSLGRAG++ WLGKRPVV
Sbjct:  131 TEMPLGTAIHNLEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKSCSATVGQVGNVGVNQKSLGRAGAQRWLGKRPVV 218          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.347e-35
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TD+PLGTAIH+IEITLGKGGQLARAAGAVA+LIAKEG+S TL+LPSGE+RLIS+NCSAT+GQVGNV AN+ +LG+AGSK WLGKRP V
Sbjct:  134 TDVPLGTAIHSIEITLGKGGQLARAAGAVAELIAKEGRSTTLRLPSGEIRLISENCSATIGQVGNVNANNGTLGKAGSKRWLGKRPRV 221          
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 3
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            T+MPLGTAIHNIEITLGKGGQLARAAGAVA+LIAKE +SATL+LPSGEVRLIS+NCSAT+GQVGN+ AN++S G+AG+K WLGKR  V
Sbjct:  134 TNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAGAKRWLGKRSEV 221          
The following BLAST results are available for this feature:
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_OENPA6.517e-3994.1950S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL6.517e-3994.1950S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH6.517e-3994.1950S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI6.517e-3994.1950S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR6.517e-3994.1950S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_CUSEX8.511e-3990.9150S ribosomal protein L2, plastid OS=Cuscuta exalt... [more]
RK2_PELHO3.234e-3889.7750S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2_CUSRE3.234e-3889.7750S ribosomal protein L2, plastid OS=Cuscuta refle... [more]
RK2_CYCTA3.347e-3581.8250S ribosomal protein L2, chloroplastic OS=Cycas t... [more]
RK2_PINTH2.833e-3480.6850S ribosomal protein L2, chloroplastic OS=Pinus t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01210 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624119 ID=BQ624119; Name=BQ624119; organism=Citrus sinensis; type=EST; length=580bp
ATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCT
ACATGAAGAACATAAGCCAGATGACGGAACGGGAAGACCTAGGATGTAGA
AGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTC
ATGTGGTACTTCATTATATGATATTGTGGTACTTCATTATATGATATATA
TAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGC
TTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAG
ATGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATA
GAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGT
AGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTT
CTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAA
GTGGGGAATGTTGGGGCGAACCACAAAAGTTTGGGTAGAGCCGGATCTAA
ATGTTGGCTAGGGAAGCGTCCTGTAGTAAG
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