CB290532

Overview
NameCB290532
Unique NameCB290532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.332e-35
Identity = 81/164 (49.39%), Postives = 117/164 (71.34%), Query Frame = -3
Query:  329 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 817
            V QA++G+++K      H GS+L+  V  +++A S M+F+T+Y DTGL+G+Y V  K D +DDL +  + E T+L   VSEA+V RA+ QLK+S+LL +DGT+ VAEDIGRQ++T GRR+  AE+   ID+V A  V   AN+ I+D+DIAI+A+G I+GL DY
Sbjct:  301 VTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRVDDLVHFSLREWTRLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDY 464          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.088e-34
Identity = 72/175 (41.14%), Postives = 110/175 (62.86%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            V  A++G ++    GG H+ S LA     N++ +S   F+  Y +TGL G + V     +DD+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDAS V+ + +++IYD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  306 VANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.054e-34
Identity = 70/174 (40.23%), Postives = 110/174 (63.22%), Query Frame = -3
Query:  296 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNR 817
            ++Q M+G+WN+    GK++ S L + V   ++AES   F T Y+DTGLFG Y V +P+ +DDL   ++ E  ++A   ++ +V R + +L ++ L+  DGTS V E IGRQ+LT GRR+   E++ RI+ +  + V+RVA+  + D   A+ A+GPI   PDYN+ +   YWNR
Sbjct:  295 LIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKEWQRIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTLLRDVSPAVTAIGPIANYPDYNFVKGWTYWNR 468          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.799e-33
Identity = 69/168 (41.07%), Postives = 113/168 (67.26%), Query Frame = -3
Query:  317 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDC-LDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFR 817
            VMQ++ G+W+++      + S L+  +  N +A S M+F+T+Y DTGL+G+Y V++    LDD  +  + E T+++   +E +V RA++QLK+ LLL +DGT+ VAEDIGRQ++T G+R+  A++   +D+V    +KRVA ++++D+D A+AA G I GL DY   R
Sbjct:  291 VMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWGIYLVSENLMNLDDTLHFTLKEWTRMSIAPTEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVAQKYLWDKDFALAAFGNIDGLKDYGRIR 458          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.870e-32
Identity = 75/176 (42.61%), Postives = 114/176 (64.77%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G+Y V +    +DDL +  +    +L    + A+V RA+ QL++SLLL +D T+ +AEDIGRQLLT GRR+   E+  RI  +    V RVA+  I+D+DIA++A+G I+GL DYN  R     NR+
Sbjct:  283 VMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTV-ATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  296 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDD---LAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNR 817
            +    +G W+      +   S L Q++G +    ++  FN NYKDTGLFG+Y VA    L+D   +  ++ +E   LA   +E +V  A+NQ +++L  +++  +  A    ++LL  G     +EL A+I  VDA  V+   +R +YDRD+A   +G  +  P+Y   R    W R
Sbjct:  294 IANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDLNDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKVDAGAVREAISRHVYDRDLAAVGVGRTEAFPNYALTRAGMSWWR 470          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 55/173 (31.79%), Postives = 103/173 (59.54%), Query Frame = -3
Query:  311 QAMLGSWNKNSVGGKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTK-----LAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRR 811
            QA++G+W++    G +  S LA     N  +A S M+F+T+Y D+GL+G+Y V   D  +     I+ E  K      + ++S+A+V RA+ QLK++LLL +DG++ + EDIGRQ++T G+R+   E+F ++D +    +   AN  + ++ +++ A+G    +P+ ++   +
Sbjct:  289 QAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVT--DSNEHNVQLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEK 459          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 45/124 (36.29%), Postives = 74/124 (59.68%), Query Frame = -3
Query:  386 RVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCL-----DDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFI 742
            + G N I  S+ AF   Y D GL G YA+A+P        +++ +  M E  +++  +SE +  RA+NQLK   +L +DGT+ +A+DIGRQ+L++G R+P A  F ++D++    + RV  R +
Sbjct:  323 KAGHNPI-HSLNAFWAPYSDVGLLGFYAIAEPGKSYGHEWENILHYAMRELIRVSRNISEEEFERAKNQLKLQTMLQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRVGPRVL 445          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 52/147 (35.37%), Postives = 85/147 (57.82%), Query Frame = -3
Query:  398 MQAMLGSWNKNSVGG--KHMGSELAQRVGINE--IAESMMAFNTNYKDTGLFGV----YAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVA 814
            +Q +LG     S GG  K M S L   V +N+    E+ +AFN +Y D+G+FG+       A P  ++ +A  +         R++E +V+RA+NQLKSSLL++++      ED+GRQ+L +GR+IP  E+ ++I+ +    + RVA
Sbjct:  279 LQTLLGGGGSFSAGGPGKGMYSRLYTHV-LNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVA 424          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = -3
Query:  386 MQAMLGSWNKNSVGG--KHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE----TTKLAYR-VSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFI 814
            +Q +LG     S GG  K M S L   V +N+    ES +AFN +Y D+GLFG+ A   P     +   +  E    TT   Y  + E +V+RA+NQL+SSLL++++      ED+GRQ+  +GR+IP  E+  RI+ +    ++RVA R +
Sbjct:  379 LQTLLGGGGSFSAGGPGKGMYSRLYTNV-LNQHGWVESCVAFNHSYTDSGLFGIAASCYPGRTLPMLQVMCRELHALTTDHGYSALGELEVSRAKNQLRSSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVAKRVV 529          
The following BLAST results are available for this feature:
BLAST of CB290532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPB_NEUCR8.332e-3549.39Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_HUMAN1.088e-3441.14Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_DICDI7.054e-3440.23Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED7.799e-3341.07Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO3.870e-3242.61Probable mitochondrial-processing peptidase subuni... [more]
UCR1_CAEEL2.602e-2031.07Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST1.291e-1931.79Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_EUGGR2.977e-1636.29Ubiquinol-cytochrome-c reductase complex core prot... [more]
MPPA_YEAST8.663e-1635.37Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_NEUCR3.292e-1536.84Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290532 ID=CB290532; Name=CB290532; organism=Citrus sinensis; type=EST; length=819bp
TTTTTTTTTTTTTTTTTGCAGCTGAAAATTTATCATCATTCCCAGTTGTT
GCTTGAGCTGTTCAGCTCAAAGCAATGAAAATCCGAGGGCCAAATCACTG
AAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTTACAGAAGCAAGA
GCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAGCCTCTCCCAAGG
GGATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGAAATCTCCGCCCA
GGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAACTTAGTATCTAT
TCCAGTAGGGTCTGCGTCTGAACCAGTTGTAGTCGGGTAAACCTTGAATT
GGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAATAAATCTGTTTGC
AACGCGCTTGACAGGGCTTGCATCTACGGAGTCTATCCTAGCAAACAATT
CAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGGCGTCCAATATCT
TCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAGGGATGATTTCAA
CTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCCGATAAGCTAACT
TGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCTAAGCAATCCGGC
TTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTTGTAGTTCGTGTT
GAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAACTCTCTGTGCCA
GCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTATTCCATGAACCC
AACATTGCCTGCATAACCA
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