CB290532

Overview
NameCB290532
Unique NameCB290532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR1_YEAST (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=COR1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 49/162 (30.25%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  329 MLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVY-AVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPV--AEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 805
            + GS+N      +  G +L   +   ++ ++   F+ +YKD+GL+G   A      +DDL +  + +  +L   V++ +V RA++ LK  L    +  +PV  A  +G ++L  G ++   E F +ID++    VK  A + ++D+DIAIA  G I+GL DY
Sbjct:  284 IFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDY 445          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 54/170 (31.76%), Postives = 85/170 (50.00%), Query Frame = -3
Query:  326 VMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIAE--SMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY--RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYN 817
            V+Q ++G     S GG  K M S L  RV +N+  +  +  AF++ Y +TGLFG+      D         + E   +A    V +  + RA+   KS++L++++     +EDIGRQLLTYG R P       ID+V A  +  V  + I    + +A+ G +  LP Y+
Sbjct:  328 VLQMLMGGGGSFSAGGPGKGMYSRLYLRV-LNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLI-SSPLTMASYGDVLSLPSYD 495          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = -3
Query:  326 VMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIAE--SMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYN 817
            V+Q ++G     S GG  K M S L +RV +NE  E  S  AF + + DTGLFG+Y  + P            E   +A  +V++A + RA+   KS++L++++     AEDIGRQ+LTYG R P  +    +D +    +    ++ I  + + + + G +  +P Y+
Sbjct:  330 VLQMLMGGGGSFSAGGPGKGMHSWLYRRV-LNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAGGKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVI-SKPLTMGSFGDVLAVPSYD 496          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_SCHPO (Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe GN=mas2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = -3
Query:  386 MQAMLGSWNKNSVGGKHMGSELAQRVGINEI-----AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTY-GRRIPFAELFARIDSVDASPVKRVANRFI 814
            +Q +LG     S GG   G  +  R+ +N +      E+ MAFN +Y D+GLFG++     D     A  I+ E       V+  +  RA+NQLKSSLL++++      ED+GRQ+ T  G  I   E+  +ID++  S + RVA R +
Sbjct:  309 LQFLLGGGGSFSAGGP--GKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVL 455          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 49/173 (28.32%), Postives = 88/173 (50.87%), Query Frame = -3
Query:  311 VMQAMLGSWNKNSVGG--KHMGSELAQRV-GINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRR 817
            V+Q ++G     S GG  K M S L  R+   ++  +S  AF + + +TGLFG+Y    P+        +  E   +A  +V++  + RA+   KS++L++++     AEDIGRQ+LTYG R P  +    +D +    +    ++ I  + + +A  G +  +P Y+   +R
Sbjct:  326 VLQMLMGGGGSFSAGGPGKGMHSWLYLRLLNQHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVADGKVNQKHLDRAKAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVI-TKPLTMATFGDVLNVPSYDSVSKR 497          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = -3
Query:  329 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 817
            V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   +  E   +A  V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL A I  V    +KRVA++ +  +  A+AA+G +  LP Y
Sbjct:  339 VLNMMMGGGGSFSAGGP--GKGMFTRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIVTREFVLMAGTVDVVELERAKTQLTSMLMMNLEARPVIFEDVGRQVLATRSRKLPH-ELCALIRDVKPEDIKRVASKMLRGKP-AVAALGDLSELPAY 503          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = -3
Query:  329 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 817
            V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T+ R++P  EL   I +V    +KRVA++ +  +  A+AA+G +  LP Y
Sbjct:  338 VLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPH-ELCTLIRNVKPEDIKRVASKMLRGKP-AVAALGDLTDLPTY 502          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = -3
Query:  329 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 817
            V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T+ R++P  EL   I +V    +KRVA++ +  +  A+AA+G +  LP Y
Sbjct:  338 VLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPH-ELCTLIRNVKPEDIKRVASKMLRGKP-AVAALGDLTDLPTY 502          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = -3
Query:  329 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 817
            V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   ++  V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL   I +V    VKRVA++ +  +  A+AA+G +  LP Y
Sbjct:  339 VLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMSGTVDAVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPH-ELCTLIRNVKPEDVKRVASKMLRGKP-AVAALGDLTDLPTY 503          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = -3
Query:  329 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDY 817
            V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL   I +V    VKRVA++ +  +  A+AA+G +  LP Y
Sbjct:  339 VLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPH-ELCTLIRNVKPEDVKRVASKMLRGKP-AVAALGDLTDLPTY 503          
The following BLAST results are available for this feature:
BLAST of CB290532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QCR1_YEAST4.299e-1530.25Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPA_SOLTU1.634e-1431.76Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH1.634e-1431.36Probable mitochondrial-processing peptidase subuni... [more]
MPPA_SCHPO1.383e-1334.23Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH3.081e-1328.32Probable mitochondrial-processing peptidase subuni... [more]
MPPA_BOVIN4.024e-1330.77Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT5.255e-1330.18Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_MOUSE5.255e-1330.18Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_PONAB6.864e-1330.77Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN8.964e-1330.77Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290532 ID=CB290532; Name=CB290532; organism=Citrus sinensis; type=EST; length=819bp
TTTTTTTTTTTTTTTTTGCAGCTGAAAATTTATCATCATTCCCAGTTGTT
GCTTGAGCTGTTCAGCTCAAAGCAATGAAAATCCGAGGGCCAAATCACTG
AAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTTACAGAAGCAAGA
GCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAGCCTCTCCCAAGG
GGATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGAAATCTCCGCCCA
GGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAACTTAGTATCTAT
TCCAGTAGGGTCTGCGTCTGAACCAGTTGTAGTCGGGTAAACCTTGAATT
GGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAATAAATCTGTTTGC
AACGCGCTTGACAGGGCTTGCATCTACGGAGTCTATCCTAGCAAACAATT
CAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGGCGTCCAATATCT
TCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAGGGATGATTTCAA
CTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCCGATAAGCTAACT
TGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCTAAGCAATCCGGC
TTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTTGTAGTTCGTGTT
GAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAACTCTCTGTGCCA
GCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTATTCCATGAACCC
AACATTGCCTGCATAACCA
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