CB290623

Overview
NameCB290623
Unique NameCB290623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.070e-27
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = -1
Query:  336 SKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQP 707
            SK Q  S R CTKV KQG  +GR++DLS+ N YD+L+ EL++LF  +G L  P+K W I+YTD E DMM+VGDDPW +FC +V KI +YTKEEV   N  + S   E + +  +   +  V QP
Sbjct:  657 SKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENANDDNKSCL-EQAALMMEASKSSSVSQP 779          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.825e-27
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = -1
Query:  411 FNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 764
            F + + L  P++  +K      Q  STR+CTKVQ QG+ +GR+VDLS  N YD+LI EL++LF+  G+L A +  W I +T++E D MLVG+DPW EFC MV+KIFIY+KEEV  + S
Sbjct:  489 FGQSQILRSPTEIQSK------QFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQA-RNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKS 599          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 4.066e-27
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = -1
Query:  411 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 776
            + + F + + L  P +  +K      Q GSTR+CTKVQ QG+ +GR+VDLS  N YD+LI EL++LF+  G+L   +  W I +TD +G  MLVGDDPW EFC MV+KI IY+KEEV  + S
Sbjct:  470 EGKKFGQSQTLRSPIEIQSK------QFGSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKS 584          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.545e-26
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = -1
Query:  429 EHEKLSQPSQTHTKDVRS--------KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEE 758
            + +++SQPS  +  D           ++Q    RSCTKV  QG+A+GR+VDL+K N Y +L ++L+++F+  G+L    K W +VYTDDE DMMLVGDDPW EFC MV++I+IY+ EE
Sbjct:  514 DSDQISQPSNGNKSDAPGTSSERSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEE 631          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -1
Query:  411 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 776
            + + F + + L  P +  +K      Q  S+R+CTKVQ QG+ +GR+VDLS  N YD+LI EL++LF+  G+L   +  W I +TD +G  MLVGDDPW EFC MV+KI IY+KEEV  + S
Sbjct:  486 ERKKFGQSQTLRSPIEIQSK------QFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKS 600          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  435 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTK 776
            + + F + + L  P++  +K      Q  STR+CTKVQ QG+ + R+VDLS  N YD+LI EL++LF+  G+L   +  W I +TD + D MLVGDDPW EFC MV+KI I+ +
Sbjct:  484 EGKKFGQSQTLRSPTEIQSK------QFSSTRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQLQT-RNQWEIAFTDSDDDKMLVGDDPWPEFCNMVKKILIFKR 590          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.562e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  444 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFI 776
            + + F   + L  P++   K      Q  S+R+CTKVQ QG+ +GR+VDLS  N YD+LI EL++LF+  G+L   +  W I +TD + D MLVGDDPW EFC MV+KIFI
Sbjct:  486 EGKKFGLSQTLRSPTEIQNK------QFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT-RNQWEIAFTDSDEDKMLVGDDPWPEFCNMVKKIFI 589          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.076e-23
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  444 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFI 776
            + + F + + L  P++  +K      Q  STR+CTKVQ QG+ +GR+VDLS  N YD+LI EL++LF+  G+L   +  W I++T  + D MLVGDDPW EFC MV++I+I
Sbjct:  486 EGKKFGQSQTLRSPTKIQSK------QFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT-RNQWKIIFTGSDEDEMLVGDDPWPEFCNMVKRIYI 589          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = -1
Query:  417 FNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 764
            F++ + L  P     K+V+S T+   TRS  KV  QG+A+ R+VDL+  + Y++LI +L++LF+   EL   +  W IV+T++EG  MLVGDDPW EFC M ++IFI +KEE+ KM
Sbjct:  487 FDQTQPLRSP-----KEVQS-TEFNFTRSRIKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRT-RNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIKKM 595          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = -1
Query:  417 STRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 689
            + R+  KVQ  G A+GR+VDL+  + Y++L+ EL+++F     +   K+ W + +TDDEGD M VGDDPW EFC MVRKI +Y  E+  K+
Sbjct:  593 TARTRIKVQMHGNAVGRAVDLANLDGYEQLMNELEEMFN----IKDLKQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKI 679          
The following BLAST results are available for this feature:
BLAST of CB290623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ARFD_ARATH1.070e-2749.19Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFN_ARATH1.825e-2750.85Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFT_ARATH4.066e-2749.18Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFI_ORYSJ1.545e-2647.46Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFU_ARATH5.871e-2647.54Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFV_ARATH2.088e-2345.61Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFL_ARATH3.562e-2347.75Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFO_ARATH6.076e-2345.95Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFM_ARATH7.427e-2145.69Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFA_ORYSJ1.110e-1646.15Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290623 ID=CB290623; Name=CB290623; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTGTATAAAACTTAGGCTACTTACATTAAGAGGTTGGAAAAG
AGGGGTAAACAACTATGTACAAAAAGGGATCGTTCGGGAAAGCAAAAGCT
AGAATTGCCATGCTCAAAATAGGGGGTATACATATTGAATGTATTATATG
AGTCGGACACCATATACCATGCCCAAAATTGGATAGTCATGCCGTCTACG
AGGAGGATTGACATCCATCTATTAGTTCATAATCCAAAATAGAATGCCCT
GAATATCTTCTTTCTGATGCTGCAACAAAACCTTGAACCATCAAAACCAC
ACCTAAAAATTCTCTGCATTGGATGCTAAAGGAAGTGGCTGTTTCACTTC
TTTTGCATCAATGCCGTCCCCATTCATTGGACTATCCTCACCCTTCGAGC
TAAAAGACACTGAGTTCATCTTCAGGACCTCCTCTTTTGTGTAGATGAAA
ATTTTGCGTACCATACCACAAAACTCCTGCCATGGATCATCTCCAACAAG
CATCATGTCACCCTCATCATCAGTATATACAATAATCCAATTTTTCTTGG
GAGCCATTAATTCACCATCAAATTCAAATAACTGATCCAGTTCGGCAATC
AATTCGTCATAGTTGTTGAACTTAGAAAGATCCACAGACCTACCAAGTGC
AATTCCCTGCTTTTGAACCTTAGTACAACTCCTAGTCGAACCACACTGTG
TTTTGCTACGAACATCCTTAGTGTGGGTCTGAGAAGGCTGGGACAGTTTC
TCGTGCTCATTGAAAACTTGATTATCATCTGCCAATTTTGAGCTTTTAGA
ATGGTCTGACTTTTGATCTGATTCAAATGCACGAAATTGTTGATCTAAGT
TTCCAGCCGGGTC
back to top