CB290623
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.070e-27 Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = -1 Query: 336 SKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQP 707 SK Q S R CTKV KQG +GR++DLS+ N YD+L+ EL++LF +G L P+K W I+YTD E DMM+VGDDPW +FC +V KI +YTKEEV N + S E + + + + V QP Sbjct: 657 SKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENANDDNKSCL-EQAALMMEASKSSSVSQP 779
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.825e-27 Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = -1 Query: 411 FNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 764 F + + L P++ +K Q STR+CTKVQ QG+ +GR+VDLS N YD+LI EL++LF+ G+L A + W I +T++E D MLVG+DPW EFC MV+KIFIY+KEEV + S Sbjct: 489 FGQSQILRSPTEIQSK------QFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQA-RNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKS 599
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3) HSP 1 Score: 122.094 bits (305), Expect = 4.066e-27 Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = -1 Query: 411 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 776 + + F + + L P + +K Q GSTR+CTKVQ QG+ +GR+VDLS N YD+LI EL++LF+ G+L + W I +TD +G MLVGDDPW EFC MV+KI IY+KEEV + S Sbjct: 470 EGKKFGQSQTLRSPIEIQSK------QFGSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKS 584
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.545e-26 Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = -1 Query: 429 EHEKLSQPSQTHTKDVRS--------KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEE 758 + +++SQPS + D ++Q RSCTKV QG+A+GR+VDL+K N Y +L ++L+++F+ G+L K W +VYTDDE DMMLVGDDPW EFC MV++I+IY+ EE Sbjct: 514 DSDQISQPSNGNKSDAPGTSSERSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEE 631
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26 Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -1 Query: 411 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 776 + + F + + L P + +K Q S+R+CTKVQ QG+ +GR+VDLS N YD+LI EL++LF+ G+L + W I +TD +G MLVGDDPW EFC MV+KI IY+KEEV + S Sbjct: 486 ERKKFGQSQTLRSPIEIQSK------QFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKS 600
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23 Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = -1 Query: 435 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTK 776 + + F + + L P++ +K Q STR+CTKVQ QG+ + R+VDLS N YD+LI EL++LF+ G+L + W I +TD + D MLVGDDPW EFC MV+KI I+ + Sbjct: 484 EGKKFGQSQTLRSPTEIQSK------QFSSTRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQLQT-RNQWEIAFTDSDDDKMLVGDDPWPEFCNMVKKILIFKR 590
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.562e-23 Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = -1 Query: 444 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFI 776 + + F + L P++ K Q S+R+CTKVQ QG+ +GR+VDLS N YD+LI EL++LF+ G+L + W I +TD + D MLVGDDPW EFC MV+KIFI Sbjct: 486 EGKKFGLSQTLRSPTEIQNK------QFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT-RNQWEIAFTDSDEDKMLVGDDPWPEFCNMVKKIFI 589
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 6.076e-23 Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -1 Query: 444 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFI 776 + + F + + L P++ +K Q STR+CTKVQ QG+ +GR+VDLS N YD+LI EL++LF+ G+L + W I++T + D MLVGDDPW EFC MV++I+I Sbjct: 486 EGKKFGQSQTLRSPTKIQSK------QFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT-RNQWKIIFTGSDEDEMLVGDDPWPEFCNMVKRIYI 589
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21 Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = -1 Query: 417 FNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 764 F++ + L P K+V+S T+ TRS KV QG+A+ R+VDL+ + Y++LI +L++LF+ EL + W IV+T++EG MLVGDDPW EFC M ++IFI +KEE+ KM Sbjct: 487 FDQTQPLRSP-----KEVQS-TEFNFTRSRIKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRT-RNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIKKM 595
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16 Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = -1 Query: 417 STRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 689 + R+ KVQ G A+GR+VDL+ + Y++L+ EL+++F + K+ W + +TDDEGD M VGDDPW EFC MVRKI +Y E+ K+ Sbjct: 593 TARTRIKVQMHGNAVGRAVDLANLDGYEQLMNELEEMFN----IKDLKQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKI 679 The following BLAST results are available for this feature:
BLAST of CB290623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290623 ID=CB290623; Name=CB290623; organism=Citrus sinensis; type=EST; length=863bpback to top |