CB290623
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 5.830e-50 Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = -1 Query: 309 NEHEKLSQPSQT---HTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPL-PLASNAEN 761 N+H + +P QT H KD ++KT S+RSCTKV KQGIALGRSVDLSKF NY+EL+AELD+LFEF+GELMAPKK+W+IVYTD+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN + S + E+ + G+G DAK+ K P S+A N Sbjct: 706 NDHREQGRPFQTNNPHPKDAQTKTN--SSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.450e-48 Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = -1 Query: 309 EHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 758 E+EK Q +Q +KDV+SKTQ STRSCTKV KQG+ALGRSVDLSKF+NYDEL AELD++FEFDGEL++ KNW IVYTD+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS N G LP+ + ++N Sbjct: 667 ENEKSGQQAQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.623e-42 Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = -1 Query: 381 TKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDS 722 TK+++SK Q GS+RSC KV KQGIALGRS+DL+KF YDELIAELDQ+F+F+GEL + KNW++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN + +S+ EDS Sbjct: 700 TKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 9.968e-42 Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = -1 Query: 309 SQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 734 SQ ++++ K+Q STRSC KV KQGIALGRSVDL+KFN Y+ELIAELD +F+F+GEL PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN + +S+ EDS N G +E++ L +S N+EN Sbjct: 708 SQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 9.968e-42 Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = -1 Query: 309 SQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 734 SQ ++++ K+Q STRSC KV KQGIALGRSVDL+KFN Y+ELIAELD +F+F+GEL PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN + +S+ EDS N G +E++ L +S N+EN Sbjct: 708 SQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.753e-30 Identity = 71/148 (47.97%), Postives = 98/148 (66.22%), Query Frame = -1 Query: 309 EKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 752 EK +P++ K+V+SK Q STRS TKVQ QG+ +GR+VDL+ Y+ELI ++++LF+ GEL + + W IV+TDDEGDMMLVGDDPW EFC MV++IFI++KEEV KM +P N + +EV+ L S +N Sbjct: 501 EKKQEPAEGSPKEVQSK-QSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM-----------TPGNQLRMLLREVETTLTTTSKTDN 635
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.753e-30 Identity = 68/148 (45.95%), Postives = 92/148 (62.16%), Query Frame = -1 Query: 339 EHEKLSQPSQTHTKDVRS--------KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQ 758 E ++LSQPS + D + +TQ RSCTKV QG+A+GR+VDL++ + YD+L +L+++F+ GEL A K W +VYTDDE DMMLVGDDPW EFC MV++I+IYT EE ++ S P+ GD I KQ Sbjct: 515 ESDQLSQPSHANKSDAPAASSEPSPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKS------KLPIIGDAIKPNPNKQ 656
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 7.410e-29 Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = -1 Query: 405 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVS 776 D+ + + K P+ +++ + + Q STRS KVQ QG A+GR+VDL+ +YDELI EL+++FE +GEL +PK W IV+TDDEGD MLVGDDPW EFC M +K+FIY +EV KM S S Sbjct: 482 DSNISDSTTKCQDPNSSNSP--KEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKS 602
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.677e-28 Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = -1 Query: 384 KLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS---VSFSSKGED 749 K +P + + K Q ++RS TKVQ QGIA+GR+VDL+ +YDELI EL+++FE G+L+A K WI+V+TDDEGDMML GDDPW EFC M +KIFIY+ +EV KM + +S S + E+ Sbjct: 469 KCQEPITPTSMSEQKKQQ--TSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLARDK-WIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLENEE 590
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28 Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = -1 Query: 414 KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 704 ++Q RSCTKV QG A+GR++DL++ Y++L +L+++F+ GEL+ K W +VYTDDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++ Sbjct: 535 ESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631 The following BLAST results are available for this feature:
BLAST of CB290623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290623 ID=CB290623; Name=CB290623; organism=Citrus sinensis; type=EST; length=863bpback to top |