CB304385

Overview
NameCB304385
Unique NameCB304385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:339..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.215e-36
Identity = 67/111 (60.36%), Postives = 93/111 (83.78%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+++Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK   N++ LY+K++MGPS R++
Sbjct:  107 YDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKN  NVR L +KSTMG   R++
Sbjct:  106 YDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 7.877e-36
Identity = 69/111 (62.16%), Postives = 93/111 (83.78%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH E++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.755e-35
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   ++LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKN  NVRCLY+KSTMG   RI+
Sbjct:  105 YHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK   NV  L +K+TM P  R++
Sbjct:  107 YDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.373e-34
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L SKV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKN  NV  L +KSTMGP+ R++
Sbjct:  107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.145e-33
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKN  NV  L +KSTMGP+ R++
Sbjct:  107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.802e-33
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK   N+  L +KSTMG   R++
Sbjct:  106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216          
The following BLAST results are available for this feature:
BLAST of CB304385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RL10A_HUMAN5.455e-3763.9660S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN5.455e-3763.9660S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_DICDI1.215e-3660.3660S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_CAEEL2.073e-3663.9660S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_MACFA7.877e-3662.1660S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_CHLRE1.755e-3567.5760S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_NEUCR1.486e-3461.2660S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_ASHGO7.373e-3462.1660S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL10A_CANGA2.145e-3361.2660S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL1B_SCHPO2.802e-3360.3660S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304385 ID=CB304385; Name=CB304385; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCAATTCAACATCTCTCCA
ACAAAAAAATTCGTACAAGCCTACCATATTATAAGATTACTAGGGCATTA
AATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGGGACCA
TTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCCCTA
CAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGCTTGAAGGAC
CCATGGTACTCTTCAGATAGAGGCACCTGACATTCNNNCAGTTTTTCTTC
AACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGATCTG
CTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCCCATGCAAAGCACCT
TCTTCAATTGGAACTTCACTGTTGCCTTAGTCTCGTTGACTTTGGACTCC
AGGGATTCTTGGTGAGTAACAAGGGTAGGGAACTTTCCTGCCTTGTTGAG
ACCAGGACCCAACAAACGAGGAATCTGCTTGATGACAGACTCTGATGCCA
AGAAAGCATGATATTTCTTGGCAAGTTTCTTCACCAATTTCTTGTTCTTG
TTCAATTTTTTCAATCCCTTCACAT
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