CB304385 | Citrus Genome Database

Homology

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.429e-53
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKN  NVRCLYLKSTMGP  RIF
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.157e-53
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKN  NVRCLYLKSTMGP +R+F
Sbjct:  107 FHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.430e-53
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKKN  NVRCLYLKSTMGP  RIF
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.444e-38
Identity = 73/111 (65.77%), Postives = 95/111 (85.59%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.099e-37
Identity = 72/111 (64.86%), Postives = 95/111 (85.59%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.099e-37
Identity = 73/111 (65.77%), Postives = 94/111 (84.68%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKN  NVR L++KS+MGP  R++
Sbjct:  107 YDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.449e-37
Identity = 73/111 (65.77%), Postives = 94/111 (84.68%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+  NVR L++KSTMGP  +++
Sbjct:  107 YDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.449e-37
Identity = 72/111 (64.86%), Postives = 94/111 (84.68%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKN  NVR LY+KS+MG   R++
Sbjct:  106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217

[Close]

BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = -3

Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKN  NVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217

The following BLAST results are available for this feature:

BLAST of CB304385 vs. ExPASy Swiss-Prot

BLAST of CB304385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28

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POSITION

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Match Name	E-value	Identity	Description
R10A1_ARATH	1.429e-53	95.50	60S ribosomal protein L10a-1 OS=Arabidopsis thalia...	[more]
R10A3_ARATH	4.157e-53	93.69	60S ribosomal protein L10a-3 OS=Arabidopsis thalia...	[more]
R10A2_ARATH	5.430e-53	93.69	60S ribosomal protein L10a-2 OS=Arabidopsis thalia...	[more]
RL10A_DANRE	6.444e-38	65.77	60S ribosomal protein L10a OS=Danio rerio GN=rpl10...	[more]
RL10A_XENLA	1.099e-37	64.86	60S ribosomal protein L10a OS=Xenopus laevis GN=rp...	[more]
R10AB_DROME	1.099e-37	65.77	60S ribosomal protein L10a-2 OS=Drosophila melanog...	[more]
RL10A_SPOFR	2.449e-37	65.77	60S ribosomal protein L10a OS=Spodoptera frugiperd...	[more]
RL10A_ICTPU	2.449e-37	64.86	60S ribosomal protein L10a OS=Ictalurus punctatus ...	[more]
RL10A_RAT	5.455e-37	63.96	60S ribosomal protein L10a OS=Rattus norvegicus GN...	[more]
RL10A_MOUSE	5.455e-37	63.96	60S ribosomal protein L10a OS=Mus musculus GN=Rpl1...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0001_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_A10 3, mRNA sequence.