CB304385

Overview
NameCB304385
Unique NameCB304385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:339..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 70/111 (63.06%), Postives = 87/111 (78.38%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y+AF+ASE +IKQIPRLLG  L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKN  NV  L +KSTMGPS RI+
Sbjct:  107 YNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKN  NV  L +KS+MGP+ R++
Sbjct:  107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 66/111 (59.46%), Postives = 88/111 (79.28%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK   N+  L +KSTMG   R++
Sbjct:  106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = -3
Query:  231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563
            Y AFL SES+IK +PRL+GP +++ GKFPT+    ESL  KV E ++TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKKN  N++  Y+KSTMG S RI+
Sbjct:  104 YDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  387 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 563
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = -3
Query:  399 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 563
            Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK
Sbjct:   58 YDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.888e-13
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = -3
Query:  366 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 563
            Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   E L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:  100 YNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  234 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRI 563
            Y  FLA  +V+ Q+ R LGP L   G+ P  +  Q  +   V   + +VK + K        VG+ +M  +Q+ +N+   +  + S+L++   NVR +++K+TMGPS R+
Sbjct:  104 YKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQGHLNVRSVFVKTTMGPSVRL 213          
The following BLAST results are available for this feature:
BLAST of CB304385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RL10A_CANAL4.779e-3363.0660S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL1_YEAST1.390e-3260.3660S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL1A_SCHPO2.372e-3259.4660S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]
RL10A_TRYBR4.045e-3259.4660S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG9.674e-1869.4960S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]
RL10A_CAERE1.263e-1776.3660S ribosomal protein L10a (Fragment) OS=Caenorhab... [more]
RL10A_ENTHI1.888e-1354.5560S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL1_METB62.308e-1131.8250S ribosomal protein L1P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304385 ID=CB304385; Name=CB304385; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCAATTCAACATCTCTCCA
ACAAAAAAATTCGTACAAGCCTACCATATTATAAGATTACTAGGGCATTA
AATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGGGACCA
TTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCCCTA
CAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGCTTGAAGGAC
CCATGGTACTCTTCAGATAGAGGCACCTGACATTCNNNCAGTTTTTCTTC
AACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGATCTG
CTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCCCATGCAAAGCACCT
TCTTCAATTGGAACTTCACTGTTGCCTTAGTCTCGTTGACTTTGGACTCC
AGGGATTCTTGGTGAGTAACAAGGGTAGGGAACTTTCCTGCCTTGTTGAG
ACCAGGACCCAACAAACGAGGAATCTGCTTGATGACAGACTCTGATGCCA
AGAAAGCATGATATTTCTTGGCAAGTTTCTTCACCAATTTCTTGTTCTTG
TTCAATTTTTTCAATCCCTTCACAT
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