CB304385
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33 Identity = 70/111 (63.06%), Postives = 87/111 (78.38%), Query Frame = -3 Query: 231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563 Y+AF+ASE +IKQIPRLLG L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE + + M+ NFLVSLLKKN NV L +KSTMGPS RI+ Sbjct: 107 YNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32 Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = -3 Query: 231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563 Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L KV + ++T+KFQLKKVLC+ VAVGN+ MEE + + MSVNF VSLLKKN NV L +KS+MGP+ R++ Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 66/111 (59.46%), Postives = 88/111 (79.28%), Query Frame = -3 Query: 231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563 Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+ N+ +++NFLVSLLKK N+ L +KSTMG R++ Sbjct: 106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = -3 Query: 231 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRIF 563 Y AFL SES+IK +PRL+GP +++ GKFPT+ ESL KV E ++TVKFQLKKVLC+G VG++ M E Q+ QNV M++NFLVSLLKKN N++ Y+KSTMG S RI+ Sbjct: 104 YDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18 Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 387 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 563 Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH + +KV+E K+ VKFQ+K+VLC+ Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17 Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = -3 Query: 399 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 563 Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK Sbjct: 58 YDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.888e-13 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = -3 Query: 366 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 563 Y+ FL S+SV +Q+ ++LGPGLNK GKFP + E L+ K+NE + V QLKKVLCMGV GN+ Sbjct: 100 YNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165
BLAST of CB304385 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11 Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = -3 Query: 234 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNXXNVRCLYLKSTMGPSSRI 563 Y FLA +V+ Q+ R LGP L G+ P + Q + V + +VK + K VG+ +M +Q+ +N+ + + S+L++ NVR +++K+TMGPS R+ Sbjct: 104 YKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQGHLNVRSVFVKTTMGPSVRL 213 The following BLAST results are available for this feature:
BLAST of CB304385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304385 ID=CB304385; Name=CB304385; organism=Citrus sinensis; type=EST; length=625bpback to top |