CB304622 | Citrus Genome Database

Overview


Name	CB304622
Unique Name	CB304622
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	608

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.778e-47
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = -1

Query:  276 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 464
            LATIPITGTGINPARS GAAVI+NK K WDD W+FWVGPFIGA IAAFYHQF+LRA   K+LG
Sbjct:  215 LATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277

HSP 2 Score: 94.7449 bits (234), Expect = 8.778e-47
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  168 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 214

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.144e-46
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = -1

Query:  285 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 464
            LATIPITGTGINPARSLGAAVIYN DK WDD W+FWVGPFIGAAIAA YHQ++LRA A K
Sbjct:  217 LATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK 276

HSP 2 Score: 94.7449 bits (234), Expect = 1.144e-46
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  170 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 216

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.301e-46
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = -1

Query:  285 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 464
            LATIPITGTGINPARSLG AVIYNKDK WDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  221 LATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK 280

HSP 2 Score: 92.8189 bits (229), Expect = 4.301e-46
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEIIGTFVLVYTVFSATDPKR+ARDSH+PVLAPLPIGFAVFMVH
Sbjct:  174 GLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVH 220

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.303e-46
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = -1

Query:  276 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 464
            LATIPITGTGINPARS GAAVIYN +K WDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  210 LATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272

HSP 2 Score: 91.6633 bits (226), Expect = 4.303e-46
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2

Query:  464 LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 601
            L AEIIGTFVLVYTVFSATDPKRSARDSH+PVLAPLPIGFAVFMVH
Sbjct:  164 LGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVH 209

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.521e-46
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = -1

Query:  276 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 464
            LATIP+TGTGINPARS G AVI+N DK WDDQW++WVGPF+GAA+AA YHQ+ILR  A+KALG
Sbjct:  219 LATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALG 281

HSP 2 Score: 90.8929 bits (224), Expect = 9.521e-46
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2

Query:  464 LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 601
            L AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  173 LGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 218

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.580e-45
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = -1

Query:  276 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 464
            LATIPITGTGINPARS GAAVIYNK +VWDD W+FWVGPF+GA  AA YHQ++LRA A+KALG
Sbjct:  212 LATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274

HSP 2 Score: 89.3521 bits (220), Expect = 3.580e-45
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = -2

Query:  464 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 595
            AE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct:  168 AELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 211

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.665e-45
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = -1

Query:  291 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 464
            LATIPITGTGINPARSLGAAV+YN  K W DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  221 LATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 278

HSP 2 Score: 94.7449 bits (234), Expect = 4.665e-45
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  174 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 220

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.666e-45
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = -1

Query:  276 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 464
            LATIPITGTGINPARS+GAAVIYN+ K WDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  212 LATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274

HSP 2 Score: 90.8929 bits (224), Expect = 4.666e-45
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2

Query:  464 LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 601
            L AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  166 LGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 211

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.667e-45
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = -1

Query:  279 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 464
            LATIPITGTGINPARS GAAVIYN +K WDD W+FWVGPF+GA  AA YHQ+ILRA A+KAL
Sbjct:  208 LATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 269

HSP 2 Score: 92.0485 bits (227), Expect = 4.667e-45
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = -2

Query:  464 LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 601
            L AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH
Sbjct:  162 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 207

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.081e-45
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = -1

Query:  291 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 464
            LATIP+TGTGINPARSLGAAV+YN  K W DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  216 LATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273

HSP 2 Score: 94.7449 bits (234), Expect = 6.081e-45
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  169 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 215

The following BLAST results are available for this feature:

BLAST of CB304622 vs. ExPASy Swiss-Prot

BLAST of CB304622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
PIP23_ARATH	8.778e-47	80.95	Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3...	[more]
PIP25_MAIZE	1.144e-46	85.00	Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1	[more]
PIP22_ORYSJ	4.301e-46	85.00	Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j...	[more]
PIP27_ARATH	4.303e-46	80.95	Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7...	[more]
PIP27_MAIZE	9.521e-46	76.19	Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1	[more]
PIP1_ATRCA	3.580e-45	79.37	Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1	[more]
PIP26_MAIZE	4.665e-45	82.76	Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1	[more]
PIP26_ORYSJ	4.666e-45	79.37	Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j...	[more]
PIP28_ARATH	4.667e-45	79.03	Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ...	[more]
PIP25_ORYSJ	6.081e-45	81.03	Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0001_IaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E10 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304622 ID=CB304622; Name=CB304622; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGTGCTTGAAAACAAC
ACAGGGGATTTACAAAAAAGCCCCTCATTGTCTAAGAGACTTTTTGCCTA
CAACTCCTTGAAAGCACAAATCACACCCCCCTCATTATTCACTTTTTGAA
ACTTAACACACCTCTACTCCTTCCCAGTTTTTTCTTTCCAATTTTAAATC
ATTAACCCCATGAAGATGTGGATAATCTACTTGTCGAAGAAACTAAAATC
AGACACGGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCT
CTCAAGATGAATTGGTGGTAGAAAGCTGCAATTGCTGCACCAATGAAGGG
TCCAACCCAGAAGAGCCATTGATCATCCCAAACCTTGTCCTTGTTGTAAA
TAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATT
GGGATTGTGGCCAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGT
GCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGC
CGAGAAGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCA
ATCCAACG