CB304622 | Citrus Genome Database

Overview


Name	CB304622
Unique Name	CB304622
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	608

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.033e-44
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = -1

Query:  291 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 464
            LATIPITGTGINPARSLG AV+YN +K W DQW+FWVGPFIGAAIAA YHQ ILRA A
Sbjct:  219 LATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA 276

HSP 2 Score: 94.7449 bits (234), Expect = 1.033e-44
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  172 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 218

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.753e-44
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = -1

Query:  285 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 464
            LATIPITGTGINPARSLGAAVIYN+ K W D W+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  222 LATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK 281

HSP 2 Score: 94.7449 bits (234), Expect = 1.753e-44
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVH
Sbjct:  175 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVH 221

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.477e-43
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYNKD  WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  224 LATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279

HSP 2 Score: 89.7373 bits (221), Expect = 2.477e-43
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VH
Sbjct:  177 GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVH 223

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.227e-43
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYNKD  WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  225 LATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280

HSP 2 Score: 89.3521 bits (220), Expect = 3.227e-43
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VH
Sbjct:  178 GLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVH 224

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.205e-43
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYNKD  WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  225 LATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280

HSP 2 Score: 89.7373 bits (221), Expect = 4.205e-43
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VH
Sbjct:  178 GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVH 224

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.555e-42
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYNKD  W+D W+FWVGPF+GAA+AA YHQ I+RA
Sbjct:  227 LATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282

HSP 2 Score: 87.8113 bits (216), Expect = 4.555e-42
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VH
Sbjct:  180 GLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVH 226

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.734e-42
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYN+D  W+D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  227 LATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282

HSP 2 Score: 87.8113 bits (216), Expect = 7.734e-42
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VH
Sbjct:  180 GLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVH 226

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.008e-41
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYN+D  W D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  230 LATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285

HSP 2 Score: 87.8113 bits (216), Expect = 1.008e-41
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VH
Sbjct:  183 GLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVH 229

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.008e-41
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+I+NKD  WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  224 LATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279

HSP 2 Score: 88.5817 bits (218), Expect = 1.008e-41
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VH
Sbjct:  177 GLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVH 223

[Close]

BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.008e-41
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = -1

Query:  297 LATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILRA 464
            LATIPITGTGINPARSLGAA+IYNKD  WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  224 LATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279

HSP 2 Score: 88.5817 bits (218), Expect = 1.008e-41
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = -2

Query:  464 GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 604
            GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VH
Sbjct:  177 GLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVH 223

The following BLAST results are available for this feature:

BLAST of CB304622 vs. ExPASy Swiss-Prot

BLAST of CB304622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
PIP24_ORYSJ	1.033e-44	82.76	Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G...	[more]
PIP23_ORYSJ	1.753e-44	80.00	Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j...	[more]
PIP13_ARATH	2.477e-43	82.14	Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3...	[more]
PIP15_ARATH	3.227e-43	82.14	Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ...	[more]
PIP14_ARATH	4.205e-43	82.14	Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ...	[more]
PIP11_ORYSJ	4.555e-42	80.36	Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G...	[more]
PIP12_MAIZE	7.734e-42	80.36	Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1	[more]
PIP13_MAIZE	1.008e-41	80.36	Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2...	[more]
PIP12_ARATH	1.008e-41	78.57	Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2...	[more]
PIP11_VICFA	1.008e-41	80.36	Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0001_IaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E10 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304622 ID=CB304622; Name=CB304622; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGTGCTTGAAAACAAC
ACAGGGGATTTACAAAAAAGCCCCTCATTGTCTAAGAGACTTTTTGCCTA
CAACTCCTTGAAAGCACAAATCACACCCCCCTCATTATTCACTTTTTGAA
ACTTAACACACCTCTACTCCTTCCCAGTTTTTTCTTTCCAATTTTAAATC
ATTAACCCCATGAAGATGTGGATAATCTACTTGTCGAAGAAACTAAAATC
AGACACGGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCT
CTCAAGATGAATTGGTGGTAGAAAGCTGCAATTGCTGCACCAATGAAGGG
TCCAACCCAGAAGAGCCATTGATCATCCCAAACCTTGTCCTTGTTGTAAA
TAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATT
GGGATTGTGGCCAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGT
GCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGC
CGAGAAGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCA
ATCCAACG