CB304622

Overview
NameCB304622
Unique NameCB304622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 7.366e-12
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = -1
Query:  303 PITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFIL 452
            P  G  +NPAR+ G A++  +   W + W++WVGPFIG A+AA  +++++
Sbjct:  200 PFDGASMNPARAFGPALVGWR---WSNHWIYWVGPFIGGALAALIYEYMI 246          

HSP 2 Score: 38.1206 bits (87), Expect = 7.366e-12
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = -2
Query:  476 GLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAV 604
            GL  EII TF LVY V+S A DPKR +    + ++APL IG  V
Sbjct:  152 GLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIV 191          
BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.242e-11
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  303 PITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFIL 452
            P +G  +NPAR+ G A++  +   W D W++WVGPFIG+A+AA  +++++
Sbjct:  200 PFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          

HSP 2 Score: 35.039 bits (79), Expect = 1.242e-11
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = -2
Query:  476 GLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAV 604
            GL  EII TF LVY V+S   DPKR +    + ++APL IG  V
Sbjct:  152 GLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIV 191          
BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.960e-11
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = -1
Query:  300 GTLATIPITGTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFILR 470
            G L  I +TG  +NPARS G AV+ N   +W D W++WVGP +GA +AA  ++F+ +
Sbjct:  185 GHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVYWVGPIVGAIVAALLYKFVFK 238          

HSP 2 Score: 24.6386 bits (52), Expect = 5.960e-11
Identity = 14/43 (32.56%), Postives = 22/43 (51.16%), Query Frame = -2
Query:  464 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 592
            E + TF+LV  V   +DP R    + +   APL +G ++   H
Sbjct:  148 EALITFILVVVVKGVSDPGR----TDIKGSAPLAVGLSIAAGH 186          
BLAST of CB304622 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.960e-11
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = -1
Query:  306 GTGINPARSLGAAVIYNKDKVWDDQWLFWVGPFIGAAIAAFYHQFI 443
            G  +NPA S G AV+     VWD+ W++W+GPF+GAAIAA  +  I
Sbjct:  195 GASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVGAAIAALIYDII 237          

HSP 2 Score: 34.2686 bits (77), Expect = 5.960e-11
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = -2
Query:  476 EIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 592
            EI+ TF LVYTV+ +A DPK+      + V+AP+ IGF V
Sbjct:  148 EIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIV 183          
The following BLAST results are available for this feature:
BLAST of CB304622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
TIP32_ARATH7.366e-1240.00Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ARATH1.242e-1142.00Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQP_HAEIX5.960e-1145.61Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP12_ORYSJ5.960e-1150.00Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304622 ID=CB304622; Name=CB304622; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGTGCTTGAAAACAAC
ACAGGGGATTTACAAAAAAGCCCCTCATTGTCTAAGAGACTTTTTGCCTA
CAACTCCTTGAAAGCACAAATCACACCCCCCTCATTATTCACTTTTTGAA
ACTTAACACACCTCTACTCCTTCCCAGTTTTTTCTTTCCAATTTTAAATC
ATTAACCCCATGAAGATGTGGATAATCTACTTGTCGAAGAAACTAAAATC
AGACACGGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCT
CTCAAGATGAATTGGTGGTAGAAAGCTGCAATTGCTGCACCAATGAAGGG
TCCAACCCAGAAGAGCCATTGATCATCCCAAACCTTGTCCTTGTTGTAAA
TAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATT
GGGATTGTGGCCAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGT
GCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGC
CGAGAAGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCA
ATCCAACG
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