CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_HYOLA (ATP synthase subunit beta, chloroplastic OS=Hyophorbe lagenicaulis GN=atpB PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.185e-71
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES L K
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLNK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CHASI (ATP synthase subunit beta, chloroplastic OS=Chamaedorea seifrizii GN=atpB PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.185e-71
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES L K
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLNK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SORBI (ATP synthase subunit beta, chloroplastic OS=Sorghum bicolor GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVK+TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE ES LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SCHME (ATP synthase subunit beta, chloroplastic OS=Schnarfia messeniaca GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEME 427
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE E
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEGE 493
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SACOF (ATP synthase subunit beta, chloroplastic OS=Saccharum officinarum GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVK+TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE ES LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SACHY (ATP synthase subunit beta, chloroplastic OS=Saccharum hybrid GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVK+TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE ES LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSJ (ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. japonica GN=atpB PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE E+ LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSI (ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. indica GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE E+ LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSA (ATP synthase subunit beta, chloroplastic OS=Oryza sativa GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE E+ LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ORYNI (ATP synthase subunit beta, chloroplastic OS=Oryza nivara GN=atpB PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.728e-71
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL +KGIYPAVDPLDSTSTMLQPRIVG EHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE + KA NLE E+ LKK
Sbjct:  352 LSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLKK 498
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_HYOLA2.185e-7193.88ATP synthase subunit beta, chloroplastic OS=Hyopho... [more]
ATPB_CHASI2.185e-7193.88ATP synthase subunit beta, chloroplastic OS=Chamae... [more]
ATPB_SORBI3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Sorghu... [more]
ATPB_SCHME3.728e-7196.48ATP synthase subunit beta, chloroplastic OS=Schnar... [more]
ATPB_SACOF3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Saccha... [more]
ATPB_SACHY3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Saccha... [more]
ATPB_ORYSJ3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYSI3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYSA3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYNI3.728e-7192.52ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
back to top