CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4570 contig Csv1_Contig4570:110..569. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_MORIN (ATP synthase subunit beta, chloroplastic OS=Morus indica GN=atpB PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 6.144e-74
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRV+QTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKA NLEME+ LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVRQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKAMNLEMENKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_LACSA (ATP synthase subunit beta, chloroplastic OS=Lactuca sativa GN=atpB PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 6.144e-74
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHY+TAQ VKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYDTAQEVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEMESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_AGAAF (ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 6.144e-74
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE ESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEGESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NICSP (ATP synthase subunit beta, chloroplastic OS=Nicotiana sp. GN=atpB PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 8.025e-74
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRL VARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLDAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEMESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_COFAR (ATP synthase subunit beta, chloroplastic OS=Coffea arabica GN=atpB PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 8.025e-74
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELD LPEQAFYLVGNIDE TAKA NLEME+NLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLEMENNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_WHIBI (ATP synthase subunit beta, chloroplastic OS=Whiteheadia bifolia GN=atpB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL ETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE ESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLTETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEKESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_TROAR (ATP synthase subunit beta, chloroplastic OS=Trochodendron aralioides GN=atpB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-73
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_RAPSA (ATP synthase subunit beta, chloroplastic OS=Raphanus sativus GN=atpB PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQ+VKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGE D LPEQAFYLVGNIDE TAKATNLEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQQVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGEFDSLPEQAFYLVGNIDEATAKATNLEMESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PLAOC (ATP synthase subunit beta, chloroplastic OS=Platanus occidentalis GN=atpB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-73
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PHOTN (ATP synthase subunit beta, chloroplastic OS=Phormium tenax GN=atpB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-73
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQP IVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDEVTAKA NLE ESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPWIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEVTAKAMNLEKESNLKK 498
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_MORIN6.144e-7495.92ATP synthase subunit beta, chloroplastic OS=Morus ... [more]
ATPB_LACSA6.144e-7495.92ATP synthase subunit beta, chloroplastic OS=Lactuc... [more]
ATPB_AGAAF6.144e-7496.60ATP synthase subunit beta, chloroplastic OS=Agapan... [more]
ATPB_NICSP8.025e-7496.60ATP synthase subunit beta, chloroplastic OS=Nicoti... [more]
ATPB_COFAR8.025e-7495.92ATP synthase subunit beta, chloroplastic OS=Coffea... [more]
ATPB_WHIBI1.048e-7395.92ATP synthase subunit beta, chloroplastic OS=Whiteh... [more]
ATPB_TROAR1.048e-7395.92ATP synthase subunit beta, chloroplastic OS=Trocho... [more]
ATPB_RAPSA1.048e-7395.92ATP synthase subunit beta, chloroplastic OS=Raphan... [more]
ATPB_PLAOC1.048e-7395.92ATP synthase subunit beta, chloroplastic OS=Platan... [more]
ATPB_PHOTN1.048e-7396.60ATP synthase subunit beta, chloroplastic OS=Phormi... [more]

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Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
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