CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ACOCL (ATP synthase subunit beta, chloroplastic OS=Acorus calamus GN=atpB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.048e-73
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SARHE (ATP synthase subunit beta, chloroplastic OS=Saruma henryi GN=atpB PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.369e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLEM SNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAINLEMRSNLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SOLTU (ATP synthase subunit beta, chloroplastic OS=Solanum tuberosum GN=atpB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.788e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRL VARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVG IDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGTIDEATAKAMNLEMESNLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SOLLC (ATP synthase subunit beta, chloroplastic OS=Solanum lycopersicum GN=atpB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.788e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRL VARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVG IDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGTIDEATAKAMNLEMESNLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SOLBU (ATP synthase subunit beta, chloroplastic OS=Solanum bulbocastanum GN=atpB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.788e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRL VARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVG IDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGTIDEATAKAMNLEMESNLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NICRU (ATP synthase subunit beta, chloroplastic OS=Nicotiana rustica GN=atpB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.788e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRL VARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA  LEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMKLEMESNLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_LOTJA (ATP synthase subunit beta, chloroplastic OS=Lotus japonicus GN=atpB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.788e-73
Identity = 141/147 (95.92%), Postives = 141/147 (95.92%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELD LPEQAFYLVGNIDE T KATNLE ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATVKATNLEKESKLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_BETVU (ATP synthase subunit beta, chloroplastic OS=Beta vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.788e-73
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYE AQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LI SGELDGLPEQAFYLVGNIDEVTAKA NLEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLIFSGELDGLPEQAFYLVGNIDEVTAKAMNLEMESKLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PHAVU (ATP synthase subunit beta, chloroplastic OS=Phaseolus vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 2.335e-73
Identity = 141/147 (95.92%), Postives = 141/147 (95.92%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGS GKYVGL ETIRGF LILSGELD LPEQAFYLVGNIDE TAKATNLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSAGKYVGLVETIRGFNLILSGELDSLPEQAFYLVGNIDEATAKATNLEMESNLKK 498          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_MONCA (ATP synthase subunit beta, chloroplastic OS=Montinia caryophyllacea GN=atpB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 2.335e-73
Identity = 140/147 (95.24%), Postives = 142/147 (96.60%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVK+TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELD  PEQAFYLVGNIDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSFPEQAFYLVGNIDEATAKAMNLEMESNLKK 498          
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ACOCL1.048e-7395.92ATP synthase subunit beta, chloroplastic OS=Acorus... [more]
ATPB_SARHE1.369e-7395.92ATP synthase subunit beta, chloroplastic OS=Saruma... [more]
ATPB_SOLTU1.788e-7395.92ATP synthase subunit beta, chloroplastic OS=Solanu... [more]
ATPB_SOLLC1.788e-7395.92ATP synthase subunit beta, chloroplastic OS=Solanu... [more]
ATPB_SOLBU1.788e-7395.92ATP synthase subunit beta, chloroplastic OS=Solanu... [more]
ATPB_NICRU1.788e-7395.92ATP synthase subunit beta, chloroplastic OS=Nicoti... [more]
ATPB_LOTJA1.788e-7395.92ATP synthase subunit beta, chloroplastic OS=Lotus ... [more]
ATPB_BETVU1.788e-7395.92ATP synthase subunit beta, chloroplastic OS=Beta v... [more]
ATPB_PHAVU2.335e-7395.92ATP synthase subunit beta, chloroplastic OS=Phaseo... [more]
ATPB_MONCA2.335e-7395.24ATP synthase subunit beta, chloroplastic OS=Montin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
back to top