CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SHESM (ATP synthase subunit beta OS=Shewanella sp. (strain MR-4) GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.596e-51
Identity = 98/136 (72.06%), Postives = 115/136 (84.56%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKA 409
            LSR + + GIYPAVDPLDSTS  L P +VG+EHY+ A  V+  LQRYKEL+DIIAILG+DELS++D++TV+RARKIERFLSQPF VAEVFTGSPGKYV L +TIRGFK ILSGE D +PEQAFY+VG+IDE   KA
Sbjct:  324 LSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQTVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIERFLSQPFHVAEVFTGSPGKYVSLKDTIRGFKGILSGEFDHIPEQAFYMVGSIDEAVEKA 459          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SHEON (ATP synthase subunit beta OS=Shewanella oneidensis GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.596e-51
Identity = 98/136 (72.06%), Postives = 115/136 (84.56%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKA 409
            LSR + + GIYPAVDPLDSTS  L P +VG+EHY+ A  V+  LQRYKEL+DIIAILG+DELS++D++TV+RARKIERFLSQPF VAEVFTGSPGKYV L +TIRGFK ILSGE D +PEQAFY+VG+IDE   KA
Sbjct:  324 LSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQTVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIERFLSQPFHVAEVFTGSPGKYVSLKDTIRGFKGILSGEFDHIPEQAFYMVGSIDEAVEKA 459          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SHELP (ATP synthase subunit beta OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.596e-51
Identity = 96/136 (70.59%), Postives = 115/136 (84.56%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKA 409
            LSR + + GIYPAVDPLDSTS  L P++VG+EHY+ A  V+  LQRYKEL+DIIAILG+DELS+ED+ TVARARKIE++LSQPFFVAEVFTGSPGKYV L +TIRGFK +L GE D +PEQAFY+ G+IDEV  +A
Sbjct:  320 LSRNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVASGVQNVLQRYKELKDIIAILGMDELSDEDKTTVARARKIEKYLSQPFFVAEVFTGSPGKYVALKDTIRGFKGLLEGEFDHIPEQAFYMAGSIDEVIERA 455          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_MARMM (ATP synthase subunit beta OS=Maricaulis maris (strain MCS10) GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.596e-51
Identity = 99/143 (69.23%), Postives = 118/143 (82.52%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMES 430
            L+R +  KGIYPAVDPLDSTS +L+PRIVGEEHY TA+RV++ LQRYK LQDIIAILG+DELSEED+LTVARARK+ERFLSQPF VAE+FTGSPG  V +A+T++GFK I  GE D LPE AFY+VG I++   KA  L  E+
Sbjct:  336 LNRAISEKGIYPAVDPLDSTSRILEPRIVGEEHYGTARRVQEILQRYKALQDIIAILGMDELSEEDKLTVARARKVERFLSQPFDVAEIFTGSPGIQVPVADTVKGFKAICDGEYDHLPEAAFYMVGTIEDAVKKAEKLAAEA 478          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_AZOSE (ATP synthase subunit beta OS=Azoarcus sp. (strain EbN1) GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.596e-51
Identity = 99/140 (70.71%), Postives = 116/140 (82.86%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLE 421
            LSR + A GIYPAVDPLDSTS  L P +VGEEHY  A++V+ TLQRYKEL+DIIAILG+DELS ED+L V+RARKI+RFLSQPF VAEVFTGSPGKYV L +TI GFK+I++GE D LPEQAFY+VG I+E   KA  L+
Sbjct:  327 LSRDIAALGIYPAVDPLDSTSRQLDPLVVGEEHYNVARQVQVTLQRYKELRDIIAILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGSPGKYVPLKDTINGFKMIVNGECDHLPEQAFYMVGGIEEAMEKAKKLQ 466          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.309e-51
Identity = 99/143 (69.23%), Postives = 116/143 (81.12%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMES 430
            L+R +  KGIYPAVDPLDSTS ML P +VGEEHY  A++V+  LQRYK LQDIIAILG+DELSEED+ TVARARKIERFLSQPFFVAEVFTG+PGK V LA+TI+GFK + +G+ D LPE AFY+VG I+E   KA  L  E+
Sbjct:  334 LNRAIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYAVARQVQSILQRYKSLQDIIAILGMDELSEEDKQTVARARKIERFLSQPFFVAEVFTGAPGKLVDLADTIKGFKGLCNGDYDHLPEAAFYMVGGIEEAVEKAQRLAAEA 476          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NITOC (ATP synthase subunit beta OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.309e-51
Identity = 101/139 (72.66%), Postives = 114/139 (82.01%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR +   GIYPAVDPLDSTS  L P IVG+EHY+ A+ V+  LQRYKEL+DIIAILG+DELSEED+LTV+RARKI+RFLSQPFFVAEVFTGSPGKYV L ETI+ FK I+ GE D LPEQAFY+VG IDE   KA  L
Sbjct:  320 LSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYQVARAVQGNLQRYKELKDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFFVAEVFTGSPGKYVPLKETIQSFKGIVEGEYDHLPEQAFYMVGTIDEAVEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PSEMY (ATP synthase subunit beta OS=Pseudomonas mendocina (strain ymp) GN=atpD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.546e-51
Identity = 98/139 (70.50%), Postives = 114/139 (82.01%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P ++G+EHYETA+ V+  LQRYKEL+DIIAILG+DELSE+D+L VARARKI+RFLSQPFFVAEVFTG+PGKYV L +TI GF  IL G+ D LPEQAFY+VG IDE   KA  L
Sbjct:  320 LSRDIASLGIYPAVDPLDSTSRQLDPNVIGQEHYETARGVQYVLQRYKELKDIIAILGMDELSEDDKLLVARARKIQRFLSQPFFVAEVFTGAPGKYVSLKDTIAGFSGILKGDYDHLPEQAFYMVGGIDEAIEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NOVAD (ATP synthase subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.546e-51
Identity = 97/143 (67.83%), Postives = 117/143 (81.82%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMES 430
            L+R +   GIYPAVDPLDSTS +L P +VG+EHYETA+RV++TLQ+YK LQDIIAILG+DELSEED+LTVARARKI+RFLSQPF VAEVFTG PGK+V + +T+R FK ++ GE D LPE AFY+VG IDE   KA  L  E+
Sbjct:  339 LNRAISELGIYPAVDPLDSTSRVLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFHVAEVFTGIPGKFVQVEDTVRSFKAVVDGEYDHLPEAAFYMVGGIDEAVEKAKKLAAEA 481          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_DICNV (ATP synthase subunit beta OS=Dichelobacter nodosus (strain VCS1703A) GN=atpD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.546e-51
Identity = 97/142 (68.31%), Postives = 116/142 (81.69%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEME 427
            LSR +   GIYPAVDPLDSTS  L P +VGEEHY TA+RV+  LQRYKEL+DIIAILG+DELSE+D+  V RARK++RFLSQPFFVAEVFTG+PGKYV L +TIR FK I+ GE D LPEQAFY+VG+++E  AKA  ++ E
Sbjct:  320 LSRQIAELGIYPAVDPLDSTSRQLDPLVVGEEHYSTARRVQGVLQRYKELRDIIAILGMDELSEDDKAVVTRARKVQRFLSQPFFVAEVFTGAPGKYVPLKDTIRDFKAIVDGEYDHLPEQAFYMVGSMEEAVAKAEKMQAE 461          
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SHESM5.596e-5172.06ATP synthase subunit beta OS=Shewanella sp. (strai... [more]
ATPB_SHEON5.596e-5172.06ATP synthase subunit beta OS=Shewanella oneidensis... [more]
ATPB_SHELP5.596e-5170.59ATP synthase subunit beta OS=Shewanella loihica (s... [more]
ATPB_MARMM5.596e-5169.23ATP synthase subunit beta OS=Maricaulis maris (str... [more]
ATPB_AZOSE5.596e-5170.71ATP synthase subunit beta OS=Azoarcus sp. (strain ... [more]
ATPB_RHILO7.309e-5169.23ATP synthase subunit beta OS=Rhizobium loti GN=atp... [more]
ATPB_NITOC7.309e-5172.66ATP synthase subunit beta OS=Nitrosococcus oceani ... [more]
ATPB_PSEMY9.546e-5170.50ATP synthase subunit beta OS=Pseudomonas mendocina... [more]
ATPB_NOVAD9.546e-5167.83ATP synthase subunit beta OS=Novosphingobium aroma... [more]
ATPB_DICNV9.546e-5168.31ATP synthase subunit beta OS=Dichelobacter nodosus... [more]

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Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
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