CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_THEYD (ATP synthase subunit beta OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 96/139 (69.06%), Postives = 116/139 (83.45%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR +   GIYPAVDPLDSTS +L PR+VG+EHY+ A+ V+  LQRYKELQDIIAILG++ELSE+D+LTVARARK++RFLSQPF VAE FTG+PGKYV L +TI+GFK IL G+ D LPEQAFY+VG I+EV  KA  +
Sbjct:  329 LSRQIAELGIYPAVDPLDSTSRILDPRVVGDEHYQVARGVQSVLQRYKELQDIIAILGIEELSEDDKLTVARARKLQRFLSQPFHVAETFTGTPGKYVKLEDTIKGFKAILDGKYDDLPEQAFYMVGPIEEVEEKAKKM 467          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SHEAM (ATP synthase subunit beta OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 96/136 (70.59%), Postives = 114/136 (83.82%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKA 409
            LSR + + GIYPAVDPLDSTS  L P +VG+EHY+ A  V+  LQRYKEL+DIIAILG+DELS++D++TV+RARKIERFLSQPF VAEVFTGSPGKYV L +TIRGFK IL GE D +PEQAFY+VG++DE   KA
Sbjct:  324 LSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIERFLSQPFHVAEVFTGSPGKYVPLKDTIRGFKGILEGEFDHVPEQAFYMVGSVDEAVEKA 459          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PSEF5 (ATP synthase subunit beta OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P ++G EHYETA+ V+  LQRYKEL+DIIAILG+DELSE D+  V+RARKI+RFLSQPFFVAEVFTGSPGKYV L +TI GFK IL+G+ D LPEQAFY+VG IDE   KA  L
Sbjct:  320 LSRDIASLGIYPAVDPLDSTSRQLDPNVIGNEHYETARGVQYVLQRYKELKDIIAILGMDELSETDKQLVSRARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIDEAIEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PSEAE (ATP synthase subunit beta OS=Pseudomonas aeruginosa GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 97/139 (69.78%), Postives = 115/139 (82.73%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P ++G++HY+TA+ V+  LQRYKEL+DIIAILG+DELSE D+L VARARKI+RFLSQPFFVAEVFTGSPGKYV L +TI GFK IL+G+ D LPEQAFY+VG I+E   KA  L
Sbjct:  320 LSRDIASLGIYPAVDPLDSTSRQLDPLVIGQDHYDTARGVQYVLQRYKELKDIIAILGMDELSEADKLLVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAVEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PSEAB (ATP synthase subunit beta OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 97/139 (69.78%), Postives = 115/139 (82.73%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P ++G++HY+TA+ V+  LQRYKEL+DIIAILG+DELSE D+L VARARKI+RFLSQPFFVAEVFTGSPGKYV L +TI GFK IL+G+ D LPEQAFY+VG I+E   KA  L
Sbjct:  320 LSRDIASLGIYPAVDPLDSTSRQLDPLVIGQDHYDTARGVQYVLQRYKELKDIIAILGMDELSEADKLLVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAVEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PSEA8 (ATP synthase subunit beta OS=Pseudomonas aeruginosa (strain LESB58) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 97/139 (69.78%), Postives = 115/139 (82.73%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P ++G++HY+TA+ V+  LQRYKEL+DIIAILG+DELSE D+L VARARKI+RFLSQPFFVAEVFTGSPGKYV L +TI GFK IL+G+ D LPEQAFY+VG I+E   KA  L
Sbjct:  320 LSRDIASLGIYPAVDPLDSTSRQLDPLVIGQDHYDTARGVQYVLQRYKELKDIIAILGMDELSEADKLLVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAVEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PSEA7 (ATP synthase subunit beta OS=Pseudomonas aeruginosa (strain PA7) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 97/139 (69.78%), Postives = 115/139 (82.73%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P ++G++HY+TA+ V+  LQRYKEL+DIIAILG+DELSE D+L VARARKI+RFLSQPFFVAEVFTGSPGKYV L +TI GFK IL+G+ D LPEQAFY+VG I+E   KA  L
Sbjct:  320 LSRDIASLGIYPAVDPLDSTSRQLDPLVIGQDHYDTARGVQYVLQRYKELKDIIAILGMDELSEADKLLVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAVEKAKKL 458          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NAUPA (ATP synthase subunit beta OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.627e-50
Identity = 96/143 (67.13%), Postives = 120/143 (83.92%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMES 430
            L+R +  KGIYPAVDPLDSTS +L P+IVGEEHY  A+ V++ LQ+YK+LQDIIAILG+DELSEED+LTVARARKIE+FLSQPFFVA+VFTG+ G+YV L +TI GFK IL G++D LPE AFY+VG++DE   KA  ++ +S
Sbjct:  326 LNRKIAEKGIYPAVDPLDSTSRILDPQIVGEEHYRVARGVQEVLQKYKDLQDIIAILGMDELSEEDKLTVARARKIEKFLSQPFFVAKVFTGADGRYVELDKTIAGFKEILEGKVDDLPENAFYMVGDLDEAKEKAEKMKAQS 468          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SERP5 (ATP synthase subunit beta OS=Serratia proteamaculans (strain 568) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.738e-50
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR + + GIYPAVDPLDSTS  L P +VG+EHY+ A+ V+  LQRY+EL+DIIAILG+DELSEED+L V+RARKI+RFLSQPFFVAEVFTGSPGK+V L +TIRGFK I+ G+ D LPEQAFY+VG I+E   KA  L
Sbjct:  322 LSRNIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQSILQRYQELKDIIAILGMDELSEEDKLVVSRARKIQRFLSQPFFVAEVFTGSPGKFVSLKDTIRGFKGIMDGDYDHLPEQAFYMVGTIEEAVEKAKKL 460          
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PELPB (ATP synthase subunit beta OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.738e-50
Identity = 97/139 (69.78%), Postives = 113/139 (81.29%), Query Frame = 2
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNL 418
            LSR +   GIYPAVDPLDSTS +L P IVG++HY+TAQ VKQ LQRYK+LQDIIAILG+DELS+ED+L V+RARK++RFLSQPFFVAE FTG  GKYV L ETI+GFK I++G  D LPE AFYLVG I+E   KA  L
Sbjct:  324 LSRSIAELGIYPAVDPLDSTSRILDPNIVGDDHYDTAQAVKQLLQRYKDLQDIIAILGMDELSDEDKLVVSRARKVQRFLSQPFFVAEAFTGLAGKYVKLEETIKGFKEIIAGRHDNLPESAFYLVGTIEEAVEKAKTL 462          
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_THEYD3.627e-5069.06ATP synthase subunit beta OS=Thermodesulfovibrio y... [more]
ATPB_SHEAM3.627e-5070.59ATP synthase subunit beta OS=Shewanella amazonensi... [more]
ATPB_PSEF53.627e-5070.50ATP synthase subunit beta OS=Pseudomonas fluoresce... [more]
ATPB_PSEAE3.627e-5069.78ATP synthase subunit beta OS=Pseudomonas aeruginos... [more]
ATPB_PSEAB3.627e-5069.78ATP synthase subunit beta OS=Pseudomonas aeruginos... [more]
ATPB_PSEA83.627e-5069.78ATP synthase subunit beta OS=Pseudomonas aeruginos... [more]
ATPB_PSEA73.627e-5069.78ATP synthase subunit beta OS=Pseudomonas aeruginos... [more]
ATPB_NAUPA3.627e-5067.13ATP synthase subunit beta OS=Nautilia profundicola... [more]
ATPB_SERP54.738e-5069.06ATP synthase subunit beta OS=Serratia proteamacula... [more]
ATPB_PELPB4.738e-5069.78ATP synthase subunit beta OS=Pelodictyon phaeoclat... [more]

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Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
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