CB322142 | Citrus Genome Database

Overview


Name	CB322142
Unique Name	CB322142
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	460

Libraries


Library Name	Type
Mature leaf blade cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NYMAL (ATP synthase subunit beta, chloroplastic OS=Nymphaea alba GN=atpB PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.513e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELD  PEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSFPEQAFYLVGNIDEATAKAMNLEVESKLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_GALBE (ATP synthase subunit beta, chloroplastic OS=Galbulimima belgraveana GN=atpB PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.513e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA N E+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNFEVESKLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ARIMA (ATP synthase subunit beta, chloroplastic OS=Aristolochia macrophylla GN=atpB PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.513e-72
Identity = 139/147 (94.56%), Postives = 142/147 (96.60%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NL++ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLDVESXLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SPIOL (ATP synthase subunit beta, chloroplastic OS=Spinacia oleracea GN=atpB PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 1.977e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYE AQRVK+TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELD LPEQAFYLVGNIDE TAKA NLEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLEMESKLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_OENAR (ATP synthase subunit beta, chloroplastic OS=Oenothera argillicola GN=atpB PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.582e-72
Identity = 138/147 (93.88%), Postives = 142/147 (96.60%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQP IVG+EHYETAQRVK+TLQRYKELQDII+ILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVG IDE TAKA NLEMES+LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPGIVGDEHYETAQRVKETLQRYKELQDIISILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGTIDEATAKAANLEMESDLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CALFL (ATP synthase subunit beta, chloroplastic OS=Calycanthus floridus GN=atpB PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.582e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYE AQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESTLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CALFG (ATP synthase subunit beta, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpB PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.582e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYE AQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PHAAO (ATP synthase subunit beta, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=atpB PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.372e-72
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+ ILSGELDGLPEQAFYLVGNIDE TAKA NLE ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQFILSGELDGLPEQAFYLVGNIDEATAKAMNLEEESKLKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CERDE (ATP synthase subunit beta, chloroplastic OS=Ceratophyllum demersum GN=atpB PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 4.403e-72
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELD LPEQAFYLVGNIDE TAKA NLE+ES  KK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKAINLEVESKSKK 498

[Close]

BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SALZA (ATP synthase subunit beta, chloroplastic OS=Salacca zalacca GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2

Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498

The following BLAST results are available for this feature:

BLAST of CB322142 vs. ExPASy Swiss-Prot

BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPB_NYMAL	1.513e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Nympha...	[more]
ATPB_GALBE	1.513e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Galbul...	[more]
ATPB_ARIMA	1.513e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Aristo...	[more]
ATPB_SPIOL	1.977e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Spinac...	[more]
ATPB_OENAR	2.582e-72	93.88	ATP synthase subunit beta, chloroplastic OS=Oenoth...	[more]
ATPB_CALFL	2.582e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Calyca...	[more]
ATPB_CALFG	2.582e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Calyca...	[more]
ATPB_PHAAO	3.372e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Phalae...	[more]
ATPB_CERDE	4.403e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Cerato...	[more]
ATPB_SALZA	5.751e-72	94.56	ATP synthase subunit beta, chloroplastic OS=Salacc...	[more]

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Properties


Property Name	Value
Genbank description	EST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG