CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ROYRE (ATP synthase subunit beta, chloroplastic OS=Roystonea regia GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NYPFR (ATP synthase subunit beta, chloroplastic OS=Nypa fruticans GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_IPOPU (ATP synthase subunit beta, chloroplastic OS=Ipomoea purpurea GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 141/150 (94.00%), Postives = 143/150 (95.33%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKA---TNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+ ILSGELDGLPEQAFYLVGNIDE TAKA    NLEMES+LKK
Sbjct:  350 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQSILSGELDGLPEQAFYLVGNIDEATAKAMNLKNLEMESDLKK 499
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_HYPCO (ATP synthase subunit beta, chloroplastic OS=Hyphaene coriacea GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ELAOL (ATP synthase subunit beta, chloroplastic OS=Elaeis oleifera GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_DRIGR (ATP synthase subunit beta, chloroplastic OS=Drimys granadensis GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILG DELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NL++ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGSDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLDVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_DAUCA (ATP synthase subunit beta, chloroplastic OS=Daucus carota GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGE+HYETAQ+VKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL+ETIRGF+LILSGELD LPEQAFYLVGNIDE TAKA NLEMESN  K
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEDHYETAQKVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLSETIRGFRLILSGELDSLPEQAFYLVGNIDEATAKAMNLEMESNSNK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_COCNU (ATP synthase subunit beta, chloroplastic OS=Cocos nucifera GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CALUS (ATP synthase subunit beta, chloroplastic OS=Calamus usitatus GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_BALSE (ATP synthase subunit beta, chloroplastic OS=Balaka seemannii GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ROYRE5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Roysto... [more]
ATPB_NYPFR5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Nypa f... [more]
ATPB_IPOPU5.751e-7294.00ATP synthase subunit beta, chloroplastic OS=Ipomoe... [more]
ATPB_HYPCO5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Hyphae... [more]
ATPB_ELAOL5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Elaeis... [more]
ATPB_DRIGR5.751e-7293.88ATP synthase subunit beta, chloroplastic OS=Drimys... [more]
ATPB_DAUCA5.751e-7293.20ATP synthase subunit beta, chloroplastic OS=Daucus... [more]
ATPB_COCNU5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Cocos ... [more]
ATPB_CALUS5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Calamu... [more]
ATPB_BALSE5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Balaka... [more]

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Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
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