CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ACRAL (ATP synthase subunit beta, chloroplastic OS=Acrocomia aculeata GN=atpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.751e-72
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_NANDO (ATP synthase subunit beta, chloroplastic OS=Nandina domestica GN=atpB PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.511e-72
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSE+DRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL ETIRGF+LILSGELD LPEQAFYLVGNIDE TAKA NL++ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEDDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLTETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLDVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CARMI (ATP synthase subunit beta, chloroplastic OS=Caryota mitis GN=atpB PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.511e-72
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGN+DE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNVDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ILLOL (ATP synthase subunit beta, chloroplastic OS=Illicium oligandrum GN=atpB PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 9.810e-72
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPL STSTMLQPRIVGE+HYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLGSTSTMLQPRIVGEKHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_ASACA (ATP synthase subunit beta, chloroplastic OS=Asarum canadense GN=atpB PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 9.810e-72
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL  KGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NL+ ES LKK
Sbjct:  352 LSRGLAXKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAINLDEESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PHODC (ATP synthase subunit beta, chloroplastic OS=Phoenix dactylifera GN=atpB PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.281e-71
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARK+ERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKMERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_TRAFO (ATP synthase subunit beta, chloroplastic OS=Trachycarpus fortunei GN=atpB PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.673e-71
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL ETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  350 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLGETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 496
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_LICGR (ATP synthase subunit beta, chloroplastic OS=Licuala grandis GN=atpB PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.673e-71
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL ETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLGETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CHAHU (ATP synthase subunit beta, chloroplastic OS=Chamaerops humilis GN=atpB PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.673e-71
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSR L AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQT QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL ETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRVLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTSQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLGETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEVESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_LEMMI (ATP synthase subunit beta, chloroplastic OS=Lemna minor GN=atpB PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.185e-71
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQP IVGE+HYETAQRVK+TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGL ETIRGFKLILSGELD LPEQAFYLVGNIDE TAKA NLE+ES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPGIVGEDHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLEETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKAINLEVESKLKK 498
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ACRAL5.751e-7294.56ATP synthase subunit beta, chloroplastic OS=Acroco... [more]
ATPB_NANDO7.511e-7293.20ATP synthase subunit beta, chloroplastic OS=Nandin... [more]
ATPB_CARMI7.511e-7293.88ATP synthase subunit beta, chloroplastic OS=Caryot... [more]
ATPB_ILLOL9.810e-7293.88ATP synthase subunit beta, chloroplastic OS=Illici... [more]
ATPB_ASACA9.810e-7293.88ATP synthase subunit beta, chloroplastic OS=Asarum... [more]
ATPB_PHODC1.281e-7193.88ATP synthase subunit beta, chloroplastic OS=Phoeni... [more]
ATPB_TRAFO1.673e-7193.88ATP synthase subunit beta, chloroplastic OS=Trachy... [more]
ATPB_LICGR1.673e-7193.88ATP synthase subunit beta, chloroplastic OS=Licual... [more]
ATPB_CHAHU1.673e-7193.88ATP synthase subunit beta, chloroplastic OS=Chamae... [more]
ATPB_LEMMI2.185e-7193.20ATP synthase subunit beta, chloroplastic OS=Lemna ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
back to top