CF417127

Overview
NameCF417127
Unique NameCF417127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  190 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYK-FMSKYVKXGSIKSTVPVTDGA 528
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELEAL +   K + +KY   G     +   DG+
Sbjct:   42 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGS 153          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 41/114 (35.96%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  166 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EE      P ++  + + E+L+QYDGS + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY   G +
Sbjct:   88 EESPATSLPRMKKRDFSLEQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 200          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  178 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L   + E L DWE +F  KY   G +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  178 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L   + E L DWE +F  KY   G +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 40/114 (35.09%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  166 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY   G +
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 40/114 (35.09%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  166 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY   G +
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   55 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            SP     +   L+ +Y +L G         ++ + +  E   P  P ++  + T E+L+ YDG    + +LMA+  +++DV+++  FYGP GPY +FAG+DASR LA    ++   +D   D+S L   + E L+DWE +F  KY   G +
Sbjct:   28 SPLNLSLLGLCLFLLYQILRG---------ERPAAQPGEAGPPPLPKMKRRDFTLEQLRPYDGVRDPR-ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKL 168          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  187 PPPVQLGE---ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            P   +L E   +++EEL  YDG      + +AI  Q++DV +    YGPGG Y+ FAGKDASRA     F EK L  D++ L P ++  L +W   +   Y+  G +
Sbjct:   36 PQQCELSEGRLMSKEELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNWLSFYQQNYITIGKL 142          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  211 ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            +T+E+L  Y+G  + K L +AI  Q++DV + R  YGPGG Y  F GKDASRA     F E  L+ D+S     ++ AL DW   +   Y   G +
Sbjct:   54 LTKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKL 149          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  145 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEK-------DLTGDISGLGPFELEALQDWEYKFMSKYVKXGSIKS 504
            ++  + +    EP  P  +  + T  ELK+Y+GS +   + +AIK  +Y+V+    FYGP GPY+ FAG DASR LAK SF+++       +   D S L   E +AL DW+  F  KY   G + S
Sbjct:   23 RKNEKSFIASEEPKQP--EWRDYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLIS 146          
The following BLAST results are available for this feature:
BLAST of CF417127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NENF_HUMAN1.038e-1641.23Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
PGRC2_HUMAN3.020e-1635.96Membrane-associated progesterone receptor componen... [more]
PGRC1_PONAB3.020e-1641.44Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN3.020e-1641.44Membrane-associated progesterone receptor componen... [more]
PGRC2_RAT5.151e-1635.09Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE5.151e-1635.09Membrane-associated progesterone receptor componen... [more]
PGRC1_CHICK6.727e-1632.45Membrane-associated progesterone receptor componen... [more]
CB5D2_XENTR4.360e-1537.38Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]
CB5D2_DANRE1.269e-1439.58Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
DAP1_SCHPO2.826e-1437.01Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-057 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417127 ID=CF417127; Name=CF417127; organism=Citrus sinensis; type=EST; length=542bp
GCTCTGCAACTATGGGAGACTCTAAAGGAGGCGATAACAGCGTACACGGG
GCTCTCCCCGGCGGCGTTTTTTACAGTTGTTGCGTTGCTGTGGGCCATAT
ACTATGTTCTGTCGGGAATGTTTGGTTCGTCCGATAATCATCATCAGCAG
AGATCGAGGGAGTACGAGGAACAGATGGAGCCTCTGCCACCGCCTGTTCA
GCTAGGCGAGATTACCGAGGAGGAGCTCAAACAGTACGATGGCTCCGATT
CCAAAAAGCCCCTTCTCATGGCCATCAAGAGCCAGATCTACGATGTCTCT
CAGAGCAGGATGTTTTATGGACCTGGTGGGCCATATGCGTTGTTTGCTGG
AAAGGATGCTAGCAGGGCCCTTGCCAAGATGTCTTTTGAGGAAAAAGATT
TAACTGGTGATATCTCTGGTCTTGGTCCATTTGAGTTGGAGGCATTGCAG
GACTGGGAGTATAAGTTCATGAGCAAGTATGTTAAGGNTGGATCTATCAA
GTCGACAGTTCCAGTAACAGATGGAGCCTCCTCTGGTGAATC
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