CF417217

Overview
NameCF417217
Unique NameCF417217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:407..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 72/173 (41.62%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXP-NQXXXXXXPPAEHKRYNLKKLTYEERKARLVER 513
            L +D  Y G  + TG++Y+VEP  N    FR  LDVGL +TTTG RVF            +PHS KRF G+  +SK+ +AE HR +I+  HVA YMR+L +     +   F +YI  G+ AD +E +YKK H AIRA P ++         + KR+N +KLT  ERK R+ ++
Sbjct:  113 LGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 74/171 (43.27%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVE 510
            L +D  Y G  + TGE+Y VEP  +    FR  LDVGL +TTTG R+F            IPHS KRF G+  ++K  +AE HR +I+  HVA YMRTL E     Y   F +YI  GI+AD++E +YK  HA IR  P             KR+NL KLT E RKA++ +
Sbjct:  113 LRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEEDEDAYKRQFSKYIALGIKADDIETIYKNAHAGIRKDP-AFHKKPEKKVTKKRFNLAKLTLEARKAKIAK 282          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.177e-31
Identity = 79/172 (45.93%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNX-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPA-EHKRYNLKKLTYEERKARLVE 510
            L +D  YEG  EA GE+Y VEP       FR  LDVGL+KT+TG RVF            IPHS KRF G+  ++K+  AE HR +I   HVA YMR L E     +   F +YI  GI AD+LE +YKK H  IR+ P +        + E KR+N KKLT  ERK R+VE
Sbjct:  113 LGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYIKLGIVADDLENMYKKAHENIRSDPKRDRKPKKDVSKEPKRWNAKKLTNAERKQRVVE 284          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 74/170 (43.53%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPA-EHKRYNLKKLTYEERKARL 504
            L +D+ Y G  E TGE+++VEP  +    FR  LDVGL +TTTG RVF            IPHS KRF G+  ++K  +A+ HR +I+  HVA YMR+L E     +   F  YI  GI AD+LE +YKK H AIR  P          A   KR+N KKLT E+RK ++
Sbjct:  113 LGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 68/170 (40.00%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   16 EYEGHVEATGEDYSVEPTXNX-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKA 522
            +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++S QL+A+  R YI+ GHV+ YM+ L E     Y +HF  +I  GI AD++E +Y+  HA IRA P             KR+N  K++ ++++ R+ ++  A
Sbjct:  118 KYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHEKKQPRDGLVKKRWNRAKMSLKQKRDRVKQKKAA 287          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 69/170 (40.59%), Postives = 94/170 (55.29%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVER 513
            +D  YEG VE TG++Y+VE        F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + E HR +I+  ++A YMR LME     Y   F +YI  G+ AD LE +YKK HA IR  P           + KR+N  KL+ E++K R+ ++
Sbjct:  115 LDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRENP-VHEKKPKKEVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 71/171 (41.52%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXRP--FRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVER 513
            +D  YEG VE TG++Y+VE + +  P  F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + E HR +I+  +VA YMR LME     Y   F +YI  G+ AD +E LYKK HA IR  P           + KR+N  KL+ E++K R+ ++
Sbjct:  115 LDKVYEGQVEVTGDEYNVE-SIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENP-VHEKKPKKEVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 78/186 (41.94%), Postives = 98/186 (52.69%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNX----RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXP-------PAEHKRYNLKKLTYEERKARLVERLKAL 525
            L +D  ++G  EA GE    E         RPF+A LDVGL +T+TG RVF            IPHSE RF G+  +S++LDAE  + YI+ GHVA YM TL +     Y S F  YI   +EAD LE LY + HAAIR  P +      P        AE  +Y   KLT E+R A + ER+ AL
Sbjct:  113 LGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 72/169 (42.60%), Postives = 96/169 (56.80%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARL 504
            L +D  Y G  E TGE+++V+P  +    FR  LDVGL++TTTG RVF            I HS KRF GF  +SK+ +A+ HR +I+  HVA YMR L E     Y   F +YI  G+ AD +E LYKK H AIRA P +         + KR+  KKLT E+R+ ++
Sbjct:  113 LGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAHPK-KRWTEKKLTREQRQGKV 280          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.955e-28
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNX-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYN 465
            L +   Y+G  E  GEDY+VEP  +  +PF  LLD GL +T+TG++VF            IPH+EKRF G+    K+LD E  + YIY GHVA Y  T+ E  P  Y +HF  Y+   IE D +E +YK+VHA IR  P         PA+ KR++
Sbjct:  113 LNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWS 266          
The following BLAST results are available for this feature:
BLAST of CF417217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_BOMMO5.495e-3141.6260S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_AEDAE5.495e-3143.2760S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_TOXCI7.177e-3145.9360S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_DROME1.224e-3043.5360S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_SUBDO1.599e-3040.0060S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5B_XENLA2.727e-3040.5960S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA2.727e-3041.5260S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_NEUCR3.015e-2941.9460S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_HELAN8.774e-2942.6060S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_DUNSA1.955e-2842.3160S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-147 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_G4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417217 ID=CF417217; Name=CF417217; organism=Citrus sinensis; type=EST; length=602bp
CTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGGAGAGGA
CTATTCAGTTGAGCCAACTGANAACNGGAGGCCTTTCCGTGCCCTGCTTG
ATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCTT
ANGGGTGCATTGGATGGNGGACTTGATATCCCTCACAGTGAGAAGAGATT
TGCTGGATTCANNAAGGATAGTAAGCAACTTGACGCTGAAGNTCACCGTA
NATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTGATGGAA
NATGANCCAGANAANTACCNNTCTCACTTTTGTGAATACATCNAGAGAGG
TATTGAGGCTGATAACCTTGAANAGTTGTACAAGAAGGTACATGCTGCCA
TCCGTGCANACCCTAACCAGAAGAAATCTGANAAGAAGCCTCCAGCAGAG
CACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAAGGAAAGCCAG
GTTAGTTGAAAGGTTGAAAGCACTCNATGCTGCTGAAGACGATGAAGCCG
ATGAGTGAATGCGATACTAGGAAAGGTTTTGTTTCTTAGTTCAATAGGTT
AT
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