CF417233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17 Identity = 55/188 (29.26%), Postives = 77/188 (40.96%), Query Frame = 1 Query: 1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558 G+ D +EI AF AH+ +T+ LC+ E +YCD YPC G +YYGRG + + WNYNY G+A+ D L +PE + + +F+AA+W WMT V S FG T + G C + D N+ + Y Y G P Sbjct: 130 GSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVH----------------------SVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAP 282
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17 Identity = 55/184 (29.89%), Postives = 78/184 (42.39%), Query Frame = 1 Query: 1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMN-NIVSHYLYYLDLVG 549 G L + +EI AFL +T+ + A G WG C+ NYNYG G+ L LL PE +E + +AF+ A+W WMTP + +PS H +W P+ D+ + R P +G NI+ G CGQG + N N + Y Y D +G Sbjct: 131 GDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCH------------------------------------MNYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTP-QSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLG 277
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17 Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = 1 Query: 1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLV 546 G + KEI AF +T G + G G C+ ++ S YYGRG I + NY G+ + DL+N+P+ + + ++F AIW WMT + ++PS H+ +G W P+ DT + R P +G NI+ G C G A+ + + Y Y ++ Sbjct: 73 GDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGML 234
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14 Identity = 55/186 (29.57%), Postives = 82/186 (44.09%), Query Frame = 1 Query: 4 TKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558 T D+ +EI A+ AHV +T LCY E + +YC +S +Y PC P EY+GRG + + WNYNY G+ L D LN P+ + ++ ++F+ ++W W+ K Q D G FG T+ I+ G C + M V +Y Y +G P Sbjct: 92 TDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIR--KGVQYVILDPNQG----------------FGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSP 244
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14 Identity = 51/184 (27.72%), Postives = 76/184 (41.30%), Query Frame = 1 Query: 1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549 G++ D +EI A AH +T CY E+ S+ YCD+ YPC+ Y+GRG I + WN+NYG G A D L PE + + ++F+ A+W WM V +P N FG T+ + G C + + V++Y Y +G Sbjct: 113 GSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHV---------------RPVINQ-------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLG 261 The following BLAST results are available for this feature:
BLAST of CF417233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417233 ID=CF417233; Name=CF417233; organism=Citrus sinensis; type=EST; length=663bpback to top |