CF417233

Overview
NameCF417233
Unique NameCF417233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:498..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 55/188 (29.26%), Postives = 77/188 (40.96%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G+  D  +EI AF AH+  +T+              LC+  E       +YCD      YPC  G +YYGRG + + WNYNY   G+A+  D L +PE +  +   +F+AA+W WMT V                       S     FG T   + G   C   + D  N+ +  Y  Y    G  P
Sbjct:  130 GSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVH----------------------SVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAP 282          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 55/184 (29.89%), Postives = 78/184 (42.39%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMN-NIVSHYLYYLDLVG 549
            G  L + +EI AFL     +T+  +  A G    WG C+                                     NYNYG  G+ L   LL  PE +E +  +AF+ A+W WMTP +  +PS H     +W P+  D+ + R P +G   NI+ G   CGQG  +  N N +  Y  Y D +G
Sbjct:  131 GDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCH------------------------------------MNYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTP-QSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLG 277          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLV 546
            G    + KEI AF      +T  G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    DL+N+P+ +  +  ++F  AIW WMT  + ++PS H+  +G W P+  DT + R P +G   NI+ G   C  G   A+ + +  Y  Y  ++
Sbjct:   73 GDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGML 234          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 55/186 (29.57%), Postives = 82/186 (44.09%), Query Frame = 1
Query:    4 TKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            T  D+ +EI A+ AHV  +T               LCY  E    + +YC +S +Y  PC P  EY+GRG + + WNYNY   G+ L  D LN P+ + ++  ++F+ ++W W+   K  Q    D   G                FG T+ I+ G   C   +   M   V +Y  Y   +G  P
Sbjct:   92 TDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIR--KGVQYVILDPNQG----------------FGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSP 244          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 51/184 (27.72%), Postives = 76/184 (41.30%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            G++ D  +EI A  AH   +T                CY  E+   S+ YCD+     YPC+    Y+GRG I + WN+NYG  G A   D L  PE +  +  ++F+ A+W WM  V               +P  N         FG T+  + G   C   +   +   V++Y  Y   +G
Sbjct:  113 GSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHV---------------RPVINQ-------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLG 261          
The following BLAST results are available for this feature:
BLAST of CF417233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_BETVU2.440e-1729.26Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_POPTR3.186e-1729.89Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIA_SOLCI5.435e-1727.72Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIT_DIOJA3.297e-1429.57Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU5.625e-1427.72Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-163 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417233 ID=CF417233; Name=CF417233; organism=Citrus sinensis; type=EST; length=663bp
GGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGT
GGGCTGCAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGG
CCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGT
GATGATTCCTACAAATACACATATCCCTGCACCCCTGGAGCTGAGTACTA
TGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAGCCACTG
GGGAAGCATTGAAGGCAGATCTGTTGAATCATCCCGAATACATTGAGCAG
AATGCTACCCTTGCCTTTGAGGCTGCAATTTGGAAGTGGATGACCCCAGT
CAAGAAATCCCAGCCTTCAGCCCATGATGCCTTTGTTGGCAACTGGAAGC
CCACCAAGAATGATACTTTGTCCAAACGGGGACCTAACTTTGGTACCACA
ATGAATATCCTCTATGGTGAGAGCGTATGCGGTCAGGGTGATATTGATGC
TATGAACAACATTGTCTCTCATTACTTGTATTACCTTGATCTGGTTGGGT
GTTGGCCGAGAGCAGGCAGGACCTAATGAAGAACTCTCTTGTGCTGAGCA
GAAAGCCTTCAACCCAAACACCGCACCTTCAGCTGCATCTTTCTTGAGGA
CGTTTATTGTAGC
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