CF417249

Overview
NameCF417249
Unique NameCF417249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.181e-45
Identity = 89/157 (56.69%), Postives = 110/157 (70.06%), Query Frame = 1
Query:  112 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            FKVA+LGA GGIGQPL+ML+K+N  VS L L+D+   PGV ADI H++T + V G+    + LE AL G D+VIIPAGVPRKPGMTRDDLF  NA IVR L     + CP A   +++NPVNSTVPI  +  ++ G + PK L GVT LD VRA+ F
Sbjct:   29 FKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRF 185          

HSP 2 Score: 31.5722 bits (70), Expect = 2.181e-45
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  614 MLMFLVVGGHAGVTILPLLSQ 676
            +L   VVGGH+G TI+PLLSQ
Sbjct:  196 LLHIPVVGGHSGATIVPLLSQ 216          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.941e-45
Identity = 97/173 (56.07%), Postives = 122/173 (70.52%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+    +AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE-DATSALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHIBS (Malate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHIB3 (Malate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IA+ CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G  S  D++VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE-NARPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-SPSDIEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G    G+V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172          
The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
MDHM_SCHPO2.181e-4556.69Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDH_ECOLC8.941e-4556.07Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_SHISS1.992e-4456.07Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIDS1.992e-4456.07Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SHIBS1.992e-4456.07Malate dehydrogenase OS=Shigella boydii serotype 4... [more]
MDH_SHIB31.992e-4456.07Malate dehydrogenase OS=Shigella boydii serotype 1... [more]
MDH_ENT381.992e-4456.65Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDH_ECOUT1.992e-4456.07Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM1.992e-4456.07Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI1.992e-4456.07Malate dehydrogenase OS=Escherichia coli (strain K... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-179 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bp
AATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCA
GATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCG
GGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGT
CAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTCCTTCA
CCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAGCCATA
TGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAG
AATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCGGCGTTCCGAG
GAAGCCTGGAATGACCAGGGATGATCTTTTCAATATCAATGCTGGAATTG
TCAGGACACTCTGTGAAGGCATCGCAAAGTGTTGCCCCAATGCGACTGTC
AATTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCAGAGGT
TTTCAAGAAAGCTGGTACTTATGATCCAAAGAAACTCTTGGGAGTTACAA
TGCTCGATGTCGTAAGAGCCAACACATTCCGTGGCGGAAGTTTTGGGACT
TGATCCCTAGGGGATGTTGATGTTCCTGGTTGTTGGAGGTCATGCTGGAG
TAACAATTTTGCCACTTTTATCACAGGTTAAGCCTCCTTGTAGCTTCACT
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