CF417249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.181e-45 Identity = 89/157 (56.69%), Postives = 110/157 (70.06%), Query Frame = 1 Query: 112 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 FKVA+LGA GGIGQPL+ML+K+N VS L L+D+ PGV ADI H++T + V G+ + LE AL G D+VIIPAGVPRKPGMTRDDLF NA IVR L + CP A +++NPVNSTVPI + ++ G + PK L GVT LD VRA+ F Sbjct: 29 FKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRF 185 HSP 2 Score: 31.5722 bits (70), Expect = 2.181e-45 Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2 Query: 614 MLMFLVVGGHAGVTILPLLSQ 676 +L VVGGH+G TI+PLLSQ Sbjct: 196 LLHIPVVGGHSGATIVPLLSQ 216
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 8.941e-45 Identity = 97/173 (56.07%), Postives = 122/173 (70.52%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ +AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE-DATSALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHIBS (Malate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=mdh PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHIB3 (Malate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdh PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IA+ CP A V +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G S D++VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE-NARPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-SPSDIEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G G+V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-QPGEVEVP 172 The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 293
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bpback to top |