CF417249

Overview
NameCF417249
Unique NameCF417249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.208e-49
Identity = 94/157 (59.87%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V GF G   L  AL   D+V+IPAG+PRKPGM R DLFN+NAGI++TL EGI   CP A V +I+NPVN TVPI AEVFKKAGTYD K++ G+T LDV+R+  F
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTGLPAGSELSLYDVAPVVPGVAVDLSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVASCPKALVGIITNPVNGTVPIVAEVFKKAGTYDAKRVFGITTLDVIRSEAF 157

HSP 2 Score: 36.1946 bits (82), Expect = 1.208e-49
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+ G+D    +   V+GGH+G TILPLLSQV+
Sbjct:  158 VAELKGVDV-ATVKVPVIGGHSGTTILPLLSQVE 190
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.575e-49
Identity = 96/157 (61.15%), Postives = 116/157 (73.89%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIVR L E +A+ CP A V +I+NPVN+TV IAAEV KKAG YD +KL GVT LD++R+ TF
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPTP-ALQGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAQVCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKRKLFGVTTLDIIRSETF 157

HSP 2 Score: 36.5798 bits (83), Expect = 1.575e-49
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            V+E+  L+P       V+GGH+GVTILPLLSQV+
Sbjct:  158 VSELKNLEP-ARTTVPVIGGHSGVTILPLLSQVQ 190
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.052e-49
Identity = 97/160 (60.62%), Postives = 118/160 (73.75%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---PQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            K+A+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   ++GF G+   P LENA    D+V+I AGV RKPGM R DLFNINAGIV+ L E +AK CP A V +I+NPVN+TV IAAEV KKAG YD +KL GVT LDV+R+ TF
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPIPALENA----DVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKRKLFGVTTLDVLRSETF 157

HSP 2 Score: 37.3502 bits (85), Expect = 2.052e-49
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+ GL+    +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKGLNV-SRIAVPVIGGHSGVTILPLLSQVQ 190
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.052e-49
Identity = 97/160 (60.62%), Postives = 118/160 (73.75%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---PQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            K+A+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   ++GF G+   P LENA    D+V+I AGV RKPGM R DLFNINAGIV+ L E +AK CP A V +I+NPVN+TV IAAEV KKAG YD +KL GVT LDV+R+ TF
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPTPALENA----DVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKRKLFGVTTLDVLRSETF 157

HSP 2 Score: 37.3502 bits (85), Expect = 2.052e-49
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+ GL+    +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKGLNV-SRIAVPVIGGHSGVTILPLLSQVQ 190
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPG (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPE (Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
MDH_PSEHT1.208e-4959.87Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_PASMU1.575e-4961.15Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_HAES22.052e-4960.63Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_HAES12.052e-4960.63Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_YERPY2.052e-4959.87Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS2.052e-4959.87Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP2.052e-4959.87Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN2.052e-4959.87Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPG2.052e-4959.87Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPE2.052e-4959.87Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-179 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bp
AATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCA
GATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCG
GGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGT
CAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTCCTTCA
CCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAGCCATA
TGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAG
AATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCGGCGTTCCGAG
GAAGCCTGGAATGACCAGGGATGATCTTTTCAATATCAATGCTGGAATTG
TCAGGACACTCTGTGAAGGCATCGCAAAGTGTTGCCCCAATGCGACTGTC
AATTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCAGAGGT
TTTCAAGAAAGCTGGTACTTATGATCCAAAGAAACTCTTGGGAGTTACAA
TGCTCGATGTCGTAAGAGCCAACACATTCCGTGGCGGAAGTTTTGGGACT
TGATCCCTAGGGGATGTTGATGTTCCTGGTTGTTGGAGGTCATGCTGGAG
TAACAATTTTGCCACTTTTATCACAGGTTAAGCCTCCTTGTAGCTTCACT
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