CF417249

Overview
NameCF417249
Unique NameCF417249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPB (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERPA (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERP3 (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.052e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CPNA + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 2.052e-49
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.487e-49
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 39.2762 bits (90), Expect = 3.487e-49
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P   +  LV+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKLP-TEVEVLVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.720e-49
Identity = 94/157 (59.87%), Postives = 116/157 (73.89%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV++L E IA  CP A V +I+NPVN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPTACVGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETF 157

HSP 2 Score: 38.891 bits (89), Expect = 7.720e-49
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+   DP G +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKDKDP-GDVRVPVIGGHSGVTILPLLSQVE 190
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.006e-48
Identity = 95/157 (60.51%), Postives = 115/157 (73.25%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL   D+V+I AGV RKPGM R DLFN+NAGIVR L E +A+ CP A + +I+NPVN+TV IAAEV KKAG YD K+L GVT LD++RANTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEKVAQNCPKALIGIITNPVNTTVAIAAEVLKKAGVYDKKRLFGVTTLDIIRANTF 157

HSP 2 Score: 37.7354 bits (86), Expect = 1.006e-48
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQV 679
            VAE+ G DP       V+GGH+GVTILPLLSQV
Sbjct:  158 VAELKGKDP-QTTNVPVIGGHSGVTILPLLSQV 189
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_YERE8 (Malate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.006e-48
Identity = 93/157 (59.24%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA+ CP A + +I+NPVN+TV IAAEV KKAG YD  KL G+T LD +R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALKGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPKALIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGITTLDTIRSNTF 157

HSP 2 Score: 38.1206 bits (87), Expect = 1.006e-48
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQPQDIEV-PVIGGHSGVTILPLLSQI-PGISFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SERP5 (Malate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.006e-48
Identity = 92/157 (58.60%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVR L + +A  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALHGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIQQVATTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTSLDIIRSNTF 157

HSP 2 Score: 39.2762 bits (90), Expect = 1.006e-48
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P   L   V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQP-EELNVPVIGGHSGVTILPLLSQI-PGVSFT 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.312e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++G+ G+   + AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGE-DAKPALAGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIAVTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 36.965 bits (84), Expect = 1.312e-48
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P  + +  V+GGH+GVTILPLLSQV P  SF+
Sbjct:  158 VAELKGKQPQDINV-PVIGGHSGVTILPLLSQV-PGISFS 195
[Close]
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2 
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195
The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
MDH_YERPB2.052e-4959.87Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPA2.052e-4959.87Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERP32.052e-4959.87Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_SALCH3.487e-4959.87Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_VIBHB7.720e-4959.87Malate dehydrogenase OS=Vibrio harveyi (strain ATC... [more]
MDH_PROMH1.006e-4860.51Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_YERE81.006e-4859.24Malate dehydrogenase OS=Yersinia enterocolitica se... [more]
MDH_SERP51.006e-4858.60Malate dehydrogenase OS=Serratia proteamaculans (s... [more]
MDH_PECCP1.312e-4859.24Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_SALTY1.312e-4859.87Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-179 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bp
AATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCA
GATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCG
GGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGT
CAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTCCTTCA
CCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAGCCATA
TGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAG
AATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCGGCGTTCCGAG
GAAGCCTGGAATGACCAGGGATGATCTTTTCAATATCAATGCTGGAATTG
TCAGGACACTCTGTGAAGGCATCGCAAAGTGTTGCCCCAATGCGACTGTC
AATTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCAGAGGT
TTTCAAGAAAGCTGGTACTTATGATCCAAAGAAACTCTTGGGAGTTACAA
TGCTCGATGTCGTAAGAGCCAACACATTCCGTGGCGGAAGTTTTGGGACT
TGATCCCTAGGGGATGTTGATGTTCCTGGTTGTTGGAGGTCATGCTGGAG
TAACAATTTTGCCACTTTTATCACAGGTTAAGCCTCCTTGTAGCTTCACT
back to top