CF417249 | Citrus Genome Database

Overview


Name	CF417249
Unique Name	CF417249
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	700

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7591	contig	Csv1_Contig7591:41..730.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALPC (Malate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALPB (Malate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALPA (Malate dehydrogenase OS=Salmonella paratyphi A GN=mdh PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALNS (Malate dehydrogenase OS=Salmonella newport (strain SL254) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALHS (Malate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALEP (Malate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1

Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2

Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195

The following BLAST results are available for this feature:

BLAST of CF417249 vs. ExPASy Swiss-Prot

BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293


Match Name	E-value	Identity	Description
MDH_SALTI	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella typhi GN=mdh PE...	[more]
MDH_SALSV	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella schwarzengrund ...	[more]
MDH_SALPK	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella paratyphi A (st...	[more]
MDH_SALPC	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella paratyphi C (st...	[more]
MDH_SALPB	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella paratyphi B (st...	[more]
MDH_SALPA	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella paratyphi A GN=...	[more]
MDH_SALNS	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella newport (strain...	[more]
MDH_SALHS	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella heidelberg (str...	[more]
MDH_SALG2	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella gallinarum (str...	[more]
MDH_SALEP	1.312e-48	59.87	Malate dehydrogenase OS=Salmonella enteritidis PT4...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-179 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bp
AATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCA
GATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCG
GGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGT
CAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTCCTTCA
CCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAGCCATA
TGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAG
AATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCGGCGTTCCGAG
GAAGCCTGGAATGACCAGGGATGATCTTTTCAATATCAATGCTGGAATTG
TCAGGACACTCTGTGAAGGCATCGCAAAGTGTTGCCCCAATGCGACTGTC
AATTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCAGAGGT
TTTCAAGAAAGCTGGTACTTATGATCCAAAGAAACTCTTGGGAGTTACAA
TGCTCGATGTCGTAAGAGCCAACACATTCCGTGGCGGAAGTTTTGGGACT
TGATCCCTAGGGGATGTTGATGTTCCTGGTTGTTGGAGGTCATGCTGGAG
TAACAATTTTGCCACTTTTATCACAGGTTAAGCCTCCTTGTAGCTTCACT