CF417249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48 Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF Sbjct: 2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157 HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48 Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 629 VVGGHAGVTILPLLSQVKPPCSFT 700 V+GGH+GVTILPLLSQ+ P SFT Sbjct: 173 VIGGHSGVTILPLLSQI-PGVSFT 195
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48 Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF Sbjct: 2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157 HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48 Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 629 VVGGHAGVTILPLLSQVKPPCSFT 700 V+GGH+GVTILPLLSQ+ P SFT Sbjct: 173 VIGGHSGVTILPLLSQI-PGVSFT 195
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.312e-48 Identity = 92/157 (58.60%), Postives = 113/157 (71.97%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IA CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFAGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157 HSP 2 Score: 38.891 bits (89), Expect = 1.312e-48 Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 2 Query: 581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700 VAE+ G P + V+GGH+GVTILPLLSQ+ P SFT Sbjct: 158 VAELKGKQP-DEIEVPVIGGHSGVTILPLLSQI-PGVSFT 195
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.312e-48 Identity = 92/157 (58.60%), Postives = 116/157 (73.89%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA++GAAGGIGQ LA+L+K P S L LYD+ TPGV AD+SH+ T ++G+ G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV++L E IA CP A V +I+NPVN+TVPIAAEV KKAG YD ++L G+T LDV+R+ TF Sbjct: 2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRRLFGITTLDVIRSETF 157 HSP 2 Score: 39.6614 bits (91), Expect = 1.312e-48 Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2 Query: 581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682 VAE+ G DP + V+GGH+GVTILPLLSQV+ Sbjct: 158 VAELKGKDP-SDIRVPVIGGHSGVTILPLLSQVE 190
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 1.709e-48 Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G S +V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-SATEVEVP 172 HSP 2 Score: 35.8094 bits (81), Expect = 1.709e-48 Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 629 VVGGHAGVTILPLLSQVKPPCSFT 700 V+GGH+GVTILPLLSQ+ P SF+ Sbjct: 173 VIGGHSGVTILPLLSQI-PGVSFS 195
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.709e-48 Identity = 96/157 (61.15%), Postives = 112/157 (71.34%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T V+GF G+ AL G D+V+I AGV RKPGM R DLFNINAGIVR L E +A CP A V +I+NPVN+TV IAAEV KKAG YD +L GVT LDV+RA TF Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGIITNPVNTTVAIAAEVLKKAGVYDKNRLFGVTTLDVIRAETF 157 HSP 2 Score: 36.965 bits (84), Expect = 1.709e-48 Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 2 Query: 581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682 VAE G+D + V+GGH+GVTILPLLSQ++ Sbjct: 158 VAEAKGVDV-ASVKVNVIGGHSGVTILPLLSQIE 190
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 1.709e-48 Identity = 93/157 (59.24%), Postives = 115/157 (73.25%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA++GAAGGIGQ LA+L+K P S L LYD+ TPGV AD+SH+ T ++G+ G+ AL G D+V++ AGV RKPGM R DLFN+NAGIV+ L E IA CP A V +I+NPVN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TF Sbjct: 2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPTP-ALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETF 157 HSP 2 Score: 37.7354 bits (86), Expect = 1.709e-48 Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 2 Query: 581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682 VA + DP G + V+GGH+GVTILPLLSQV+ Sbjct: 158 VAALKDKDP-GQVRVPVIGGHSGVTILPLLSQVE 190
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.709e-48 Identity = 92/157 (58.60%), Postives = 116/157 (73.89%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA++GAAGGIGQ LA+L+K P S L LYD+ TPGV AD+SH+ T ++G+ G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV++L E IA CP A V +I+NPVN+TVPIAAEV KKAG YD ++L G+T LDV+R+ TF Sbjct: 2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVTCPTACVGIITNPVNTTVPIAAEVLKKAGVYDKRRLFGITTLDVIRSETF 157 HSP 2 Score: 39.2762 bits (90), Expect = 1.709e-48 Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2 Query: 581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682 VAE+ DP G + V+GGH+GVTILPLLSQV+ Sbjct: 158 VAELKDKDP-GDIRVPVIGGHSGVTILPLLSQVE 190
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 2.228e-48 Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627 KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LD++R+NTF G S +V+VP Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-SATEVEVP 172 HSP 2 Score: 35.8094 bits (81), Expect = 2.228e-48 Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 629 VVGGHAGVTILPLLSQVKPPCSFT 700 V+GGH+GVTILPLLSQ+ P SF+ Sbjct: 173 VIGGHSGVTILPLLSQI-PGVSFS 195
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.228e-48 Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1 Query: 115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579 KVA++GAAGGIGQ LA+L+K P S L LYD+ TPGV AD+SH+ T ++G+ G+ AL G D+V+I AGV RKPGM R DLFNINAGIV++L E IA CP A + +I+NPVN+TV IAAEV KKAG YD KL GVT LDV+R+ TF Sbjct: 2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLAEKIAVTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETF 157 HSP 2 Score: 40.4318 bits (93), Expect = 2.228e-48 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2 Query: 581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682 VAE+ G +P G + V+GGH+GVTILPLLSQV+ Sbjct: 158 VAELKGKNP-GEICVPVIGGHSGVTILPLLSQVE 190 The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 293
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bpback to top |