CF417249

Overview
NameCF417249
Unique NameCF417249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.312e-48
Identity = 94/157 (59.87%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 37.3502 bits (85), Expect = 1.312e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.312e-48
Identity = 92/157 (58.60%), Postives = 113/157 (71.97%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IA  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFAGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 38.891 bits (89), Expect = 1.312e-48
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P   +   V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  158 VAELKGKQP-DEIEVPVIGGHSGVTILPLLSQI-PGVSFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.312e-48
Identity = 92/157 (58.60%), Postives = 116/157 (73.89%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV++L E IA  CP A V +I+NPVN+TVPIAAEV KKAG YD ++L G+T LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRRLFGITTLDVIRSETF 157          

HSP 2 Score: 39.6614 bits (91), Expect = 1.312e-48
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+ G DP   +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKGKDP-SDIRVPVIGGHSGVTILPLLSQVE 190          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.709e-48
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G  S  +V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-SATEVEVP 172          

HSP 2 Score: 35.8094 bits (81), Expect = 1.709e-48
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SF+
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFS 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.709e-48
Identity = 96/157 (61.15%), Postives = 112/157 (71.34%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIVR L E +A  CP A V +I+NPVN+TV IAAEV KKAG YD  +L GVT LDV+RA TF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGIITNPVNTTVAIAAEVLKKAGVYDKNRLFGVTTLDVIRAETF 157          

HSP 2 Score: 36.965 bits (84), Expect = 1.709e-48
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE  G+D    +   V+GGH+GVTILPLLSQ++
Sbjct:  158 VAEAKGVDV-ASVKVNVIGGHSGVTILPLLSQIE 190          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.709e-48
Identity = 93/157 (59.24%), Postives = 115/157 (73.25%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V++ AGV RKPGM R DLFN+NAGIV+ L E IA  CP A V +I+NPVN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPTP-ALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETF 157          

HSP 2 Score: 37.7354 bits (86), Expect = 1.709e-48
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VA +   DP G +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAALKDKDP-GQVRVPVIGGHSGVTILPLLSQVE 190          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.709e-48
Identity = 92/157 (58.60%), Postives = 116/157 (73.89%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV++L E IA  CP A V +I+NPVN+TVPIAAEV KKAG YD ++L G+T LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVTCPTACVGIITNPVNTTVPIAAEVLKKAGVYDKRRLFGITTLDVIRSETF 157          

HSP 2 Score: 39.2762 bits (90), Expect = 1.709e-48
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+   DP G +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKDKDP-GDIRVPVIGGHSGVTILPLLSQVE 190          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.228e-48
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDVP 627
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IAK CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF     G  S  +V+VP
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK-SATEVEVP 172          

HSP 2 Score: 35.8094 bits (81), Expect = 2.228e-48
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SF+
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFS 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.228e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIV++L E IA  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLAEKIAVTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETF 157          

HSP 2 Score: 40.4318 bits (93), Expect = 2.228e-48
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+ G +P G +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKGKNP-GEICVPVIGGHSGVTILPLLSQVE 190          
The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
MDH_SALAR1.312e-4859.87Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_SALA41.312e-4859.87Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_ESCF31.312e-4858.60Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDH_VIBPA1.312e-4858.60Malate dehydrogenase OS=Vibrio parahaemolyticus GN... [more]
MDH_KLEP71.709e-4856.65Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_SHEAM1.709e-4861.15Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_VIBCH1.709e-4859.24Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_VIBSL1.709e-4858.60Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]
MDH_KLEP32.228e-4856.65Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_ALISL2.228e-4859.24Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-179 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bp
AATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCA
GATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCG
GGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGT
CAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTCCTTCA
CCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAGCCATA
TGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAG
AATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCGGCGTTCCGAG
GAAGCCTGGAATGACCAGGGATGATCTTTTCAATATCAATGCTGGAATTG
TCAGGACACTCTGTGAAGGCATCGCAAAGTGTTGCCCCAATGCGACTGTC
AATTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCAGAGGT
TTTCAAGAAAGCTGGTACTTATGATCCAAAGAAACTCTTGGGAGTTACAA
TGCTCGATGTCGTAAGAGCCAACACATTCCGTGGCGGAAGTTTTGGGACT
TGATCCCTAGGGGATGTTGATGTTCCTGGTTGTTGGAGGTCATGCTGGAG
TAACAATTTTGCCACTTTTATCACAGGTTAAGCCTCCTTGTAGCTTCACT
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