CF417249

Overview
NameCF417249
Unique NameCF417249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.904e-48
Identity = 101/172 (58.72%), Postives = 118/172 (68.60%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRGGSFGT*SLGDVDV 624
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V G  G+  L +ALTG D+V+IPAG+PRKPGM R DLFNINAGIV+ L EG+A  CPNA V +I+NPVN+TV IAAE  K  G YD  KL GVT LDV+RA TF         L DVDV
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADNCPNACVGIITNPVNTTVAIAAETLKAKGVYDKNKLFGVTTLDVIRAETFVA------ELKDVDV 166          

HSP 2 Score: 33.8834 bits (76), Expect = 2.904e-48
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVK 682
            V+GGH+G TILPLLSQV+
Sbjct:  173 VIGGHSGTTILPLLSQVE 190          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.904e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV R+PGM R DLFN+NAGIV+ L + IAK CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARRPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 37.3502 bits (85), Expect = 2.904e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.904e-48
Identity = 93/159 (58.49%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFRG 585
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGI+R L   +A+  PNA + +I+NPVN+ VPIAAEV KKAG Y+P KL GVT LD++R+NTF G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKVCGFGGE-DASPALVGADIVLISAGVARKPGMDRSDLFNVNAGIIRNLIGQVARTSPNACIGIITNPVNTMVPIAAEVLKKAGVYNPNKLFGVTTLDIIRSNTFVG 159          

HSP 2 Score: 37.7354 bits (86), Expect = 2.904e-48
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQV 679
            V E+  LDP   L   V+GGH+GVTILPLLSQ+
Sbjct:  158 VGELKHLDP-ATLDIPVIGGHSGVTILPLLSQI 189          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.904e-48
Identity = 91/157 (57.96%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+   + AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +A  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGE-DAKPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLIQQVATTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 38.1206 bits (87), Expect = 2.904e-48
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P   L   V+GGH+GVTILPLLSQ+ P  +FT
Sbjct:  158 VAELKGKKP-AELDVPVIGGHSGVTILPLLSQI-PGVNFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.782e-48
Identity = 92/158 (58.23%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  112 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ--LENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            +KV +LGA GGIGQPL++L+K+N  V+ L LYD+    GV  D+SH+ T +VV+GF  +    L NAL   D+V+IPAGVPRKPGMTRDDLF INA IVR L    A+  PNA + +ISNPVNSTVPI A+V K  G Y+PKKL GVT LD +RA  F
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAATAESAPNAAILVISNPVNSTVPIVAQVLKNKGVYNPKKLFGVTTLDSIRAARF 175          

HSP 2 Score: 31.5722 bits (70), Expect = 3.782e-48
Identity = 11/16 (68.75%), Postives = 16/16 (100.00%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQ 676
            V+GGH+G+TI+PL+SQ
Sbjct:  191 VIGGHSGITIIPLISQ 206          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.785e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++G+ G+   + AL G D+V+I AGV RKPGM R DLFN+NAGIVR L E IA  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGE-DAKPALAGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIAITCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 35.8094 bits (81), Expect = 3.785e-48
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQV 679
            VAE+ G  P  + +  V+GGH+GVTILPLLSQV
Sbjct:  158 VAELKGKQPQDINV-PVIGGHSGVTILPLLSQV 189          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.785e-48
Identity = 93/157 (59.24%), Postives = 113/157 (71.97%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + IA  CP A V +I+NPVN+TV IAAEV KKAG YD  KL GVT LD++R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTF 157          

HSP 2 Score: 37.3502 bits (85), Expect = 3.785e-48
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  629 VVGGHAGVTILPLLSQVKPPCSFT 700
            V+GGH+GVTILPLLSQ+ P  SFT
Sbjct:  173 VIGGHSGVTILPLLSQI-PGVSFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.933e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G ++V+I AGV RKPGM R DLFNINAGIVR L E +AK CP + + +I+NPVN+TV IAAEV KKAG YD  +L GVT LDV+R+NTF
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTEVKIKGFAGEDATP-ALEGANVVLISAGVARKPGMDRSDLFNINAGIVRNLVEQVAKTCPKSLIGIITNPVNTTVAIAAEVLKKAGVYDKNRLFGVTTLDVIRSNTF 157          

HSP 2 Score: 36.965 bits (84), Expect = 4.933e-48
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVKPPCSFT 700
            VAE+ G  P   +   V+GGH+GVTILPLLSQ+ P  +FT
Sbjct:  158 VAELKGKKP-QEIEVPVIGGHSGVTILPLLSQI-PGVNFT 195          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.933e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIV++L E IA  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETF 157          

HSP 2 Score: 39.6614 bits (91), Expect = 4.933e-48
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+   DP G +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKDKDP-GEIRVPVIGGHSGVTILPLLSQVE 190          
BLAST of CF417249 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.933e-48
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  115 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 579
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIV++L E IA  CP A + +I+NPVN+TV IAAEV KKAG YD  KL GVT LDV+R+ TF
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETF 157          

HSP 2 Score: 39.6614 bits (91), Expect = 4.933e-48
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 2
Query:  581 VAEVLGLDP*GMLMFLVVGGHAGVTILPLLSQVK 682
            VAE+   DP G +   V+GGH+GVTILPLLSQV+
Sbjct:  158 VAELKDKDP-GEIRVPVIGGHSGVTILPLLSQVQ 190          
The following BLAST results are available for this feature:
BLAST of CF417249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
MDH_ALTMD2.904e-4858.72Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_SALDC2.904e-4859.24Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_EDWI92.904e-4858.49Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_ENTS82.904e-4857.96Malate dehydrogenase OS=Enterobacter sakazakii (st... [more]
MDHM_YEAST3.782e-4858.23Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_ERWCT3.785e-4859.24Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_CITK83.785e-4859.24Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_PHOLL4.933e-4859.24Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_VIBFM4.933e-4859.24Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]
MDH_VIBF14.933e-4859.24Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-179 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417249 ID=CF417249; Name=CF417249; organism=Citrus sinensis; type=EST; length=700bp
AATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCA
GATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCG
GGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGT
CAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTCCTTCA
CCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAGCCATA
TGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAG
AATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCGGCGTTCCGAG
GAAGCCTGGAATGACCAGGGATGATCTTTTCAATATCAATGCTGGAATTG
TCAGGACACTCTGTGAAGGCATCGCAAAGTGTTGCCCCAATGCGACTGTC
AATTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCAGAGGT
TTTCAAGAAAGCTGGTACTTATGATCCAAAGAAACTCTTGGGAGTTACAA
TGCTCGATGTCGTAAGAGCCAACACATTCCGTGGCGGAAGTTTTGGGACT
TGATCCCTAGGGGATGTTGATGTTCCTGGTTGTTGGAGGTCATGCTGGAG
TAACAATTTTGCCACTTTTATCACAGGTTAAGCCTCCTTGTAGCTTCACT
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