CF417389
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.024e-12 Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1 Query: 175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 K+FET SYLP +S E + K+I Y++ GW P +E H P YW MWKLPM+G TD +++ E Sbjct: 24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAE 88 HSP 2 Score: 27.7202 bits (60), Expect = 3.024e-12 Identity = 10/30 (33.33%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 419 QKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 ++ P+ +++IG+DN RQ Q + L +P Sbjct: 93 KRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4) HSP 1 Score: 65.0846 bits (157), Expect = 8.803e-12 Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1 Query: 175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 +KFET SYLP + + + K++ Y++ GW P +E H+ P YW MWKLPM+G TD +LKE Sbjct: 17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKE 81 HSP 2 Score: 25.7942 bits (55), Expect = 8.803e-12 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQ 475 K +P++ VR+IGFDN Q Sbjct: 87 KAHPNNHVRLIGFDNYAQ 104
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.902e-11 Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1 Query: 175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 +KFET SYLP L E + K++ Y++ GW P +E H+ P YW MWKLPM+G TD +L E Sbjct: 17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAE 81 HSP 2 Score: 25.0238 bits (53), Expect = 1.902e-11 Identity = 11/30 (36.67%), Postives = 17/30 (56.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P VR+IG+DN Q Q + + + P Sbjct: 87 KAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.255e-11 Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1 Query: 175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 +KFET SYLP ++ + K++ YL+ GW P +E H+ P + YW MWKLPM+G TD ++L E Sbjct: 17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGE 81 HSP 2 Score: 24.2534 bits (51), Expect = 3.255e-11 Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 401 RRVGEVQ---KEYPHSFVRIIGFDNKRQVQ 481 R +GE + K P++ VR++G+DN Q Q Sbjct: 77 RILGEAEACHKANPNNHVRLVGYDNFAQSQ 106
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11 Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1 Query: 175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 K++ETLSYLPPLSD+ + +++ Y++ G+IP +EF EK HH WT+WKLP++ + A +VL E Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--EKDPTPELHH----------WTLWKLPLFNASSAQEVLNE 72
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 9.262e-11 Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1 Query: 175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 +K ET SYLP ++ + + ++ Y++ GW P +E HS P YW MWKLPM+G TDA VL E Sbjct: 17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAE 81 HSP 2 Score: 25.0238 bits (53), Expect = 9.262e-11 Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAK 505 K P++ VR+IG+DN Q Q + L + Sbjct: 87 KANPNNHVRLIGYDNYAQSQGANMLVKR 114
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 9.262e-11 Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1 Query: 319 SPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 S Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSE 38 HSP 2 Score: 34.2686 bits (77), Expect = 9.262e-11 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 44 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 73 The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bpback to top |