CF417389

Overview
NameCF417389
Unique NameCF417389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.024e-12
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAE 88          

HSP 2 Score: 27.7202 bits (60), Expect = 3.024e-12
Identity = 10/30 (33.33%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  419 QKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            ++  P+  +++IG+DN RQ Q  + L  +P
Sbjct:   93 KRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 65.0846 bits (157), Expect = 8.803e-12
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            +KFET SYLP +  + + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +LKE
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKE 81          

HSP 2 Score: 25.7942 bits (55), Expect = 8.803e-12
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  422 KEYPHSFVRIIGFDNKRQ 475
            K +P++ VR+IGFDN  Q
Sbjct:   87 KAHPNNHVRLIGFDNYAQ 104          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.902e-11
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1
Query:  175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            +KFET SYLP L  E + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +L E
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAE 81          

HSP 2 Score: 25.0238 bits (53), Expect = 1.902e-11
Identity = 11/30 (36.67%), Postives = 17/30 (56.67%), Query Frame = 2
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   87 KAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.255e-11
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            +KFET SYLP ++   + K++ YL+  GW P +E            H+ P +    YW MWKLPM+G TD  ++L E
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGE 81          

HSP 2 Score: 24.2534 bits (51), Expect = 3.255e-11
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  401 RRVGEVQ---KEYPHSFVRIIGFDNKRQVQ 481
            R +GE +   K  P++ VR++G+DN  Q Q
Sbjct:   77 RILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            K++ETLSYLPPLSD+ + +++ Y++  G+IP +EF  EK      HH          WT+WKLP++  + A +VL E
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--EKDPTPELHH----------WTLWKLPLFNASSAQEVLNE 72          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 9.262e-11
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1
Query:  175 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            +K ET SYLP ++ + +  ++ Y++  GW P +E            HS P      YW MWKLPM+G TDA  VL E
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAE 81          

HSP 2 Score: 25.0238 bits (53), Expect = 9.262e-11
Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 2
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAK 505
            K  P++ VR+IG+DN  Q Q  + L  +
Sbjct:   87 KANPNNHVRLIGYDNYAQSQGANMLVKR 114          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 9.262e-11
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  319 SPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            S  Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSE 38          

HSP 2 Score: 34.2686 bits (77), Expect = 9.262e-11
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   44 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS_PSEHY3.024e-1240.26Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_CHRVI8.803e-1238.96Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS1.902e-1140.26Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_THIDA3.255e-1138.96Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS_SYNP24.837e-1141.56Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS1_HYDMR9.262e-1138.96Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_ACECL9.262e-1172.41Ribulose bisphosphate carboxylase small chain 2 (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-319 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bp
GTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
AGGAGGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAAT
TATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTG
CCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCAT
GCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGAT
C
back to top