CF417389
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 3.073e-70 Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 1 Query: 1 VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEGWGGPEGIPT 435 VAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+ GWIPCLEFELE +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E + PT Sbjct: 11 VATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPT 155 HSP 2 Score: 56.225 bits (134), Expect = 3.073e-70 Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 E K YP S +RIIGFDNKRQVQCISF+A KPP Sbjct: 148 EASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.805e-68 Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A A R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL E Sbjct: 10 AVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAE 144 HSP 2 Score: 52.373 bits (124), Expect = 2.805e-68 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2 Query: 407 VGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 514 V E + YP +++RIIGFDN RQVQCISF+A KP G Sbjct: 145 VQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 1.799e-67 Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A A + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E Sbjct: 10 AVATSTNAAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGE 143 HSP 2 Score: 56.9954 bits (136), Expect = 1.799e-67 Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 514 E +K YP++++RIIGFDN RQVQCISF+A KPPG Sbjct: 146 EAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 3.059e-67 Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A A R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E Sbjct: 10 AVATRTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGE 143 HSP 2 Score: 56.9954 bits (136), Expect = 3.059e-67 Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 514 E +K YP++++RIIGFDN RQVQCISF+A KPPG Sbjct: 146 EAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 1.258e-65 Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 1 Query: 1 VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 VAT NR AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E Sbjct: 11 VATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 143 HSP 2 Score: 53.5286 bits (127), Expect = 1.258e-65 Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 E +K YP +F+RIIGFDN RQVQCISF+A KP Sbjct: 146 EAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.258e-65 Identity = 101/134 (75.37%), Postives = 116/134 (86.57%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E Sbjct: 9 AVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 141 HSP 2 Score: 52.373 bits (124), Expect = 1.258e-65 Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 E +K YP +F RIIGFDN RQVQCISF+A KP Sbjct: 144 EAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 2.788e-65 Identity = 95/132 (71.97%), Postives = 118/132 (89.39%), Query Frame = 1 Query: 10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E Sbjct: 16 ASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 147 HSP 2 Score: 53.1434 bits (126), Expect = 2.788e-65 Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 E +K YP +F+RIIGFDN RQVQC+SF+A KP Sbjct: 150 EAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 4.742e-65 Identity = 98/132 (74.24%), Postives = 115/132 (87.12%), Query Frame = 1 Query: 10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E Sbjct: 14 AAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 144 HSP 2 Score: 53.1434 bits (126), Expect = 4.742e-65 Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 E +K YP +F+RIIGFDN RQVQC+SF+A KP Sbjct: 147 EAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 1.788e-64 Identity = 97/132 (73.48%), Postives = 114/132 (86.36%), Query Frame = 1 Query: 10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E Sbjct: 14 AAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 144 HSP 2 Score: 53.5286 bits (127), Expect = 1.788e-64 Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 E +K YP +F+RIIGFDN RQVQCISF+A KP Sbjct: 147 EAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 1.494e-63 Identity = 98/132 (74.24%), Postives = 114/132 (86.36%), Query Frame = 1 Query: 10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E Sbjct: 14 AAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 143 HSP 2 Score: 53.1434 bits (126), Expect = 1.494e-63 Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 2 Query: 413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508 E +K YP +F+RIIGFDN RQVQC+SF+A KP Sbjct: 146 EAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177 The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bpback to top |