CF417389
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50 Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A RA AQ +MV PF +SS FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ E Sbjct: 11 AAVARAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 5.286e-50 Identity = 89/134 (66.42%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A R AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ E Sbjct: 6 AAVARVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAE 138
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.178e-49 Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A RA AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ E Sbjct: 11 AAVARAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 8.439e-48 Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = 1 Query: 4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 A +R S AQ++MV PF GL SS+AFP T+K D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E+ YL+R+GWIPC+EF + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE Sbjct: 10 AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKE 141
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.470e-47 Identity = 93/164 (56.71%), Postives = 116/164 (70.73%), Query Frame = 1 Query: 28 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEGWGGPEGIP-TFIR----PNYRI*QQASSAVHQFPCCQ 504 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE + P F+R N R Q S ++ P C+ Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCE 170
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 5.470e-47 Identity = 93/164 (56.71%), Postives = 116/164 (70.73%), Query Frame = 1 Query: 28 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEGWGGPEGIP-TFIR----PNYRI*QQASSAVHQFPCCQ 504 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE + P F+R N R Q S ++ P C+ Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCE 170
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47 Identity = 93/164 (56.71%), Postives = 117/164 (71.34%), Query Frame = 1 Query: 28 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEGWGGPEGIP-TFIR----PNYRI*QQASSAVHQFPCCQ 504 + A+ VAPF GLKS++ P ++++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE + P F+R N R Q S ++ P C+ Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCE 170
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.592e-46 Identity = 82/126 (65.08%), Postives = 106/126 (84.13%), Query Frame = 1 Query: 28 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 + A+ VAPF GLKS++ P ++++N S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL E Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNE 131
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.715e-46 Identity = 83/126 (65.87%), Postives = 104/126 (82.54%), Query Frame = 1 Query: 28 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 + A+ VAPF GLKS++ P + ++ + S SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL E Sbjct: 8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNE 132
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 4.631e-46 Identity = 82/126 (65.08%), Postives = 105/126 (83.33%), Query Frame = 1 Query: 28 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405 + A+ VAPF GLKS++ P ++++ + S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EAL K++ YL+RS W+PCLEF + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL E Sbjct: 8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNE 131 The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bpback to top |