CF417389

Overview
NameCF417389
Unique NameCF417389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:80..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.694e-25
Identity = 54/122 (44.26%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:   58 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 134

HSP 2 Score: 34.2686 bits (77), Expect = 1.694e-25
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.205e-25
Identity = 56/136 (41.18%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   19 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            A++   ++V    G   SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 136

HSP 2 Score: 34.2686 bits (77), Expect = 2.205e-25
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  142 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 171
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.328e-25
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTE 134

HSP 2 Score: 34.2686 bits (77), Expect = 6.328e-25
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-24
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSE 134

HSP 2 Score: 34.2686 bits (77), Expect = 1.395e-24
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.395e-24
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL +
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSD 135

HSP 2 Score: 34.6538 bits (78), Expect = 1.395e-24
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  141 KAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.816e-24
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:   73 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 134

HSP 2 Score: 32.7278 bits (73), Expect = 1.816e-24
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2 
Query:  428 YPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  142 FPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.363e-24
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 134

HSP 2 Score: 34.2686 bits (77), Expect = 2.363e-24
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.367e-24
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 125

HSP 2 Score: 34.2686 bits (77), Expect = 2.367e-24
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  131 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 160
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.778e-24
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 135

HSP 2 Score: 32.7278 bits (73), Expect = 6.778e-24
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2 
Query:  428 YPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  143 FPDAYIRLVCFDANRQVQISGFLVHRPP 170
[Close]
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.229e-23
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405
            M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLRE 137
The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS4_ACECL1.694e-2544.26Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_ACECL2.205e-2541.18Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_ACECL6.328e-2551.09Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_ACEAT1.395e-2451.09Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS7_ACECL1.395e-2450.00Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS4_ACEAT1.816e-2443.59Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_ACEAT2.363e-2450.00Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_ACEAT2.367e-2450.00Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_ACEAT6.778e-2450.00Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_CHLRE3.229e-2355.43Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-319 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bp
GTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
AGGAGGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAAT
TATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTG
CCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCAT
GCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGAT
C
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