CF417389
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.694e-25 Identity = 54/122 (44.26%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 58 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 G SA P + A N R M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 134 HSP 2 Score: 34.2686 bits (77), Expect = 1.694e-25 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.205e-25 Identity = 56/136 (41.18%), Postives = 74/136 (54.41%), Query Frame = 1 Query: 19 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 A++ ++V G SS+ P S +A R M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 136 HSP 2 Score: 34.2686 bits (77), Expect = 2.205e-25 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 142 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 171
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.328e-25 Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ + G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTE 134 HSP 2 Score: 34.2686 bits (77), Expect = 6.328e-25 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-24 Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTDA+QVL E Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSE 134 HSP 2 Score: 34.2686 bits (77), Expect = 1.395e-24 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.395e-24 Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL + Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSD 135 HSP 2 Score: 34.6538 bits (78), Expect = 1.395e-24 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 141 KAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.816e-24 Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 73 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 +A P + S +N R M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 134 HSP 2 Score: 32.7278 bits (73), Expect = 1.816e-24 Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 428 YPHSFVRIIGFDNKRQVQCISFLAAKPP 511 +P +++R++ FD RQVQ FL +PP Sbjct: 142 FPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.363e-24 Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 134 HSP 2 Score: 34.2686 bits (77), Expect = 2.363e-24 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 140 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.367e-24 Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 125 HSP 2 Score: 34.2686 bits (77), Expect = 2.367e-24 Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 422 KEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511 K +P +++R++ FD RQVQ FL +PP Sbjct: 131 KAFPDAYIRLVCFDANRQVQISGFLVHRPP 160
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 6.778e-24 Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSE 135 HSP 2 Score: 32.7278 bits (73), Expect = 6.778e-24 Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 428 YPHSFVRIIGFDNKRQVQCISFLAAKPP 511 +P +++R++ FD RQVQ FL +PP Sbjct: 143 FPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.229e-23 Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 1 Query: 148 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKE 405 M VW P K FET SYLPPLSDE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E Sbjct: 46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLRE 137 The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bpback to top |