CF417446

Overview
NameCF417446
Unique NameCF417446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.146e-32
Identity = 62/111 (55.86%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            IGCH ++ W  QL  + ++ +L+V+DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVG++KE+L  TIAKH   A+A
Sbjct:    9 IGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.803e-32
Identity = 63/111 (56.76%), Postives = 84/111 (75.68%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            IGCHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VG+ KE+LQ  I KH    +A
Sbjct:    9 IGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 6.243e-32
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 319
            I  H++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVG+ KEEL   +  H A
Sbjct:   21 ISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.426e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            I CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVG+ KEE++  + KH   A+A
Sbjct:   14 IACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.426e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            I CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVG+ KEE++  + KH   A+A
Sbjct:   14 IACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.426e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            I CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVG+ KEE++  + KH   A+A
Sbjct:   14 IACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.013e-22
Identity = 43/97 (44.33%), Postives = 72/97 (74.23%), Query Frame = 2
Query:   14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 304
            T E+W+++L +++   ++VV +F+A+WCGPC+ +APF  EL++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VG+ K ELQ+ +
Sbjct:   30 TKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = 2
Query:   14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 304
            T E W+++L +++   ++V+ +F+A WCGPC+ IAP+  EL++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VG+ K EL + I
Sbjct:   31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.704e-21
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 2
Query:   26 WNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 310
            W     +  E+ +L+VVDF+ASWCGPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++G+KK+EL++ ++K
Sbjct:   36 WQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 2.461e-20
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 2
Query:   23 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 304
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CF417446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH2_BRANA2.146e-3255.86Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH4_ARATH2.803e-3256.76Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.243e-3257.55Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA3.426e-3054.55Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL3.426e-3054.55Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA3.426e-3054.55Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH9_ARATH2.013e-2244.33Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC7.650e-2243.30Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH2_ARATH1.704e-2146.32Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE2.461e-2050.00Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-376 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417446 ID=CF417446; Name=CF417446; organism=Citrus sinensis; type=EST; length=525bp
CATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCA
ATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGA
CCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCC
TAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCA
CTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGG
AAGATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGAC
TATTGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCC
TCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTC
TGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTT
GAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACA
ATAATTTAATTTCATATTTGGGGTA
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