CF417446

Overview
NameCF417446
Unique NameCF417446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   47 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 316
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  G+ KE+L++ I K++
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.764e-18
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   59 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 304
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  G+ KE+L++TI
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.702e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   23 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGSKKEELQQTI 304
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.547e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 2
Query:   62 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGSKKEELQQTIAKH 313
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V G+ +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 2
Query:   29 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V G+ +  +  TI KH ++  A
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 2
Query:   14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 304
            + E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VG+  +E+++ +
Sbjct:    9 SAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   32 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 319
            EQL + +  K ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.816e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   62 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 307
            +LVVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVG+    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 2
Query:   62 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 316
            +LVVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVG+    ++Q IA ++
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   62 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 319
            +LV+VDF A WCGPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++G+    L+Q I K+ A
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
The following BLAST results are available for this feature:
BLAST of CF417446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_OPHHA1.350e-1843.33Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK1.764e-1850.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB6.702e-1847.37Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY2.547e-1751.76Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
NGLY1_CAEBR3.326e-1740.59Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXL4_ARATH9.677e-1742.27Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO1_CAEEL1.651e-1639.58Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST2.816e-1650.00Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRX2_YEAST4.803e-1645.88Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_PLAF74.803e-1645.35Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-376 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417446 ID=CF417446; Name=CF417446; organism=Citrus sinensis; type=EST; length=525bp
CATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCA
ATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGA
CCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCC
TAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCA
CTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGG
AAGATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGAC
TATTGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCC
TCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTC
TGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTT
GAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACA
ATAATTTAATTTCATATTTGGGGTA
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