CF417446

Overview
NameCF417446
Unique NameCF417446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.221e-12
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   62 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 304
            ++VV+D    WCGPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V G+K E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:   23 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 316
            +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+G+  K  L + + K++
Sbjct:   76 SWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   53 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 319
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++G+  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 2
Query:   56 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 316
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVG+  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   59 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 328
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V G+K ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   20 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 310
            E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  G+   +L+++I++
Sbjct:  419 EEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   53 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 316
            E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++G+  K  + QT+ K+L
Sbjct:   50 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   50 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 310
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V +    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   50 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 328
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ G+   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   68 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 319
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+G+  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
The following BLAST results are available for this feature:
BLAST of CF417446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXF2_ARATH3.221e-1240.24Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_PEA4.207e-1239.00Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL5.495e-1237.36Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_GRIPA5.495e-1242.70Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF1_ARATH7.177e-1237.36Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TXND2_MOUSE1.224e-1135.05Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXM_CHLRE1.224e-1138.89Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TR548_MIMIV1.599e-1134.83Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
GLRX3_XENTR1.599e-1133.33Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_PORYE2.088e-1134.88Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-376 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417446 ID=CF417446; Name=CF417446; organism=Citrus sinensis; type=EST; length=525bp
CATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCA
ATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGA
CCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCC
TAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCA
CTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGG
AAGATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGAC
TATTGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCC
TCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTC
TGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTT
GAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACA
ATAATTTAATTTCATATTTGGGGTA
back to top