CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19 Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWV 478 C R GKL+EA +I+ MP S WG+LL GC +HGNTE+A A +FEL S G VLLSN YAA RW D A R + + G+ K G SW+ Sbjct: 447 CIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19 Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEE 484 C GRAG+L+EA +E M I P VW LL C+I+GN EL YA +++ + G VLLSN YA+ G+W+ K RKM D VKK TG+S +EE Sbjct: 421 CMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEE 524
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19 Identity = 55/149 (36.91%), Postives = 73/149 (48.99%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVP--DTSFV 613 C RAG+L+EA IE I +W LL+ C+ HG EL YA +++ LG V LS Y A GR D + K +R GV KE G SW+E N+ H FV GD H E + + +M + G+V D+SFV Sbjct: 565 CMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVCLVSRQMIEEGFVTVLDSSFV 713
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.869e-18 Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGI-VSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEE 484 C GRAG L +A MP P +W ALL+ C +HGN ELA+ AA +F+L PG + LSN YA+ +W++ +K R++++ + + K G SW E Sbjct: 415 CIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTSE 519 HSP 2 Score: 27.335 bits (59), Expect = 1.869e-18 Identity = 18/83 (21.69%), Postives = 33/83 (39.76%), Query Frame = 1 Query: 49 KCGVIEPAYRVFEEVRVRNLGMWNAM-----------------------------------LIACAQHSHMNKVFDLFKEMER 192 KCG I A RVF++++ +N+ W +M L AC+ ++K +++F+ M+R Sbjct: 320 KCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQR 402
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDE-KNQTIRYHSERLAIA 682 C GRAG+L+ ++ +I +W LL C+IH N EL A ++ +L + G VL+++ Y+AA + A RK++R ++ G SW+E G++VH FV D+ H + IY +L E+ AGY P+ S D HSE+LAIA Sbjct: 350 CMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIA 520
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577 RAG+L EA I++M + P VW LL+ C+ GN LA AA+ + ++ + +VLL + +A++G WE+AA R ++ VKK G SW+E +++H F A D H +IY L + +M Sbjct: 622 RAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQM 749
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18 Identity = 51/158 (32.28%), Postives = 84/158 (53.16%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKM-PIAPTESVWGALLTGCRIHGNTELAAYAADRV--FELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDE 637 C GR G++ EA ++ + +WG+LL C++HG ELA ++R+ F+ G G VLLSN YA +W+ K R+ +R++G+KKE G S +E V+ FV+ D+ H + EIY ++ L ++M ++ V ++ DE Sbjct: 663 CITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSFLTTLPTVTPSLELDE 820
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 197 AGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWV----EEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577 AG+ ++A+ +IE+MP P + +L+ C TEL Y + ++ E + G V +SNAYA G W++ K R+M++ +G+KK+ G SW+ EEG VH FVA D+ H R EI L L +M Sbjct: 697 AGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEG--VHVFVANDKTHTRINEIQMMLALLLYDM 825
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17 Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK 583 C+ R G+L +A S + +MP+ P ++WG LL C + +L A+ + + G +VL+SN YAA +WE + R +++ + +KK G SW+E + + FV+GD H R I+ + L +M++ Sbjct: 709 CAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMKE 845
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17 Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFEL--GIV--SPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIY 547 RAG+L +A+++IEKMP+ P SVWGALL GCR H N EL A + +L G V V LSN Y + R +A+K R M+ +GV+K G S +E V FV+GD H +I+ Sbjct: 369 RAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIH 490 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |