CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWV 478
            C      R GKL+EA  +I+ MP     S WG+LL GC +HGNTE+A   A  +FEL   S G  VLLSN YAA  RW D A  R  + + G+ K  G SW+
Sbjct:  447 CIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEE 484
            C     GRAG+L+EA   +E M I P   VW  LL  C+I+GN EL  YA +++  +     G  VLLSN YA+ G+W+   K RKM  D  VKK TG+S +EE
Sbjct:  421 CMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEE 524          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 55/149 (36.91%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVP--DTSFV 613
            C      RAG+L+EA   IE   I     +W  LL+ C+ HG  EL  YA +++  LG       V LS  Y A GR  D  +  K +R  GV KE G SW+E  N+ H FV GD  H    E    +  +  +M + G+V   D+SFV
Sbjct:  565 CMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVCLVSRQMIEEGFVTVLDSSFV 713          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.869e-18
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGI-VSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEE 484
            C     GRAG L +A      MP  P   +W ALL+ C +HGN ELA+ AA  +F+L     PG  + LSN YA+  +W++ +K R++++ + + K  G SW  E
Sbjct:  415 CIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTSE 519          

HSP 2 Score: 27.335 bits (59), Expect = 1.869e-18
Identity = 18/83 (21.69%), Postives = 33/83 (39.76%), Query Frame = 1
Query:   49 KCGVIEPAYRVFEEVRVRNLGMWNAM-----------------------------------LIACAQHSHMNKVFDLFKEMER 192
            KCG I  A RVF++++ +N+  W +M                                   L AC+    ++K +++F+ M+R
Sbjct:  320 KCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQR 402          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDE-KNQTIRYHSERLAIA 682
            C     GRAG+L+ ++ +I          +W  LL  C+IH N EL   A  ++ +L   + G  VL+++ Y+AA   +  A  RK++R   ++   G SW+E G++VH FV  D+ H  +  IY +L E+      AGY P+ S        D         HSE+LAIA
Sbjct:  350 CMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIA 520          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577
            RAG+L EA   I++M + P   VW  LL+ C+  GN  LA  AA+ + ++   +   +VLL + +A++G WE+AA  R  ++   VKK  G SW+E  +++H F A D  H    +IY  L  +  +M
Sbjct:  622 RAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQM 749          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 51/158 (32.28%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKM-PIAPTESVWGALLTGCRIHGNTELAAYAADRV--FELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDE 637
            C     GR G++ EA   ++ +        +WG+LL  C++HG  ELA   ++R+  F+ G    G  VLLSN YA   +W+   K R+ +R++G+KKE G S +E    V+ FV+ D+ H  + EIY  ++ L ++M    ++     V   ++ DE
Sbjct:  663 CITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSFLTTLPTVTPSLELDE 820          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  197 AGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWV----EEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577
            AG+ ++A+ +IE+MP  P   +  +L+  C     TEL  Y + ++ E    + G  V +SNAYA  G W++  K R+M++ +G+KK+ G SW+    EEG  VH FVA D+ H R  EI   L  L  +M
Sbjct:  697 AGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEG--VHVFVANDKTHTRINEIQMMLALLLYDM 825          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK 583
            C+     R G+L +A S + +MP+ P  ++WG LL  C  +   +L    A+ + +      G +VL+SN YAA  +WE   + R +++ + +KK  G SW+E   + + FV+GD  H R   I+  +  L  +M++
Sbjct:  709 CAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMKE 845          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFEL--GIV--SPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIY 547
            RAG+L +A+++IEKMP+ P  SVWGALL GCR H N EL   A   + +L  G V       V LSN Y +  R  +A+K R M+  +GV+K  G S +E    V  FV+GD  H    +I+
Sbjct:  369 RAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIH 490          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP403_ARATH6.130e-1946.08Putative pentatricopeptide repeat-containing prote... [more]
PP385_ARATH8.005e-1945.19Pentatricopeptide repeat-containing protein At5g15... [more]
PP181_ARATH8.005e-1936.91Pentatricopeptide repeat-containing protein At2g33... [more]
PPR62_ARATH1.869e-1838.10Pentatricopeptide repeat-containing protein At1g28... [more]
PP284_ARATH3.042e-1832.75Pentatricopeptide repeat-containing protein At3g56... [more]
PP280_ARATH3.042e-1835.94Pentatricopeptide repeat-containing protein At3g53... [more]
PP246_ARATH8.851e-1832.28Pentatricopeptide repeat-containing protein At3g22... [more]
PP431_ARATH1.972e-1737.40Pentatricopeptide repeat-containing protein At5g55... [more]
PP370_ARATH1.972e-1730.66Putative pentatricopeptide repeat-containing prote... [more]
PP259_ARATH2.575e-1742.62Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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