CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17 Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580 GRAG + +A +IE MP+ P V L CR G E+A A+ + E+ V LS+ Y+ +WE+ A +KM++++GVKK G SW+E N+V F A DR + ++IY +++L +EM+ Sbjct: 557 GRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQ 686
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17 Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVE 481 C GRAGKL EA +I+ M + P VWGALL CR HGN ELA AA + EL + G +LL++ YA AG WE + +KM++ + ++ G SWVE Sbjct: 430 CMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRFRRFLGSSWVE 532
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP228_ARATH (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17 Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 2 Query: 161 KCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565 K C GR G+L +A ++I W ALL+ CR++ ++ + A+R+ EL + G VLL N Y +G A + R+++RD+GVKKE LSW+ GN+ H+F D H ++ IY LE + Sbjct: 597 KHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLETM 731
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP212_ARATH (Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17 Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 2 Query: 194 RAGKLQEAISVIEK-MPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDR-CHVRTREIYQKLEELGEEME 580 RAG+++EA +++K MP+ P++S+WG++L+ CR + E A A + +L G VLLSN YA GRW + K R+ + ++GVKK G S V +H FVA ++ H R EI + L+ L EM+ Sbjct: 517 RAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16 Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHV-RTREIYQKLEELGEEMEKAG 589 GRAG+L+EA V+E M + P ++ LL CR GN L A++ L P + +LL++ Y +G+ E A K R ++ ++ + K+ G S VE +VH+FV+ D V +T IY ++E + EE+++ G Sbjct: 676 GRAGRLEEATGVVETMHLKPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFG 809
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16 Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFEL--GIV--SPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIY 547 RAG+L +A+ +IEKMP+ P SVWGALL GCR H N EL A + +L G V V LSN Y + R +A K R M+ +G++K G S +E V FV+GD H +I+ Sbjct: 369 RAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIH 490
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16 Identity = 49/136 (36.03%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME--KAGY 592 G AG L+EA ++I+ MP+ +W +LL+ CR GN E+A AA + +L VLLSNAYA+ G +E+A + R +++++ ++KE G S +E VH F++ H ++ EIY L+ L ++ K+G+ Sbjct: 406 GGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLDILNWDVSTIKSGF 541
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16 Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565 R+G L+EA I++MP SVWG+L+ GCRIH ++ + + ++ G LLSN YA G WE+ + R ++ +KK G S +E +V F AG+ ++T EIY+ L L Sbjct: 652 RSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKVFRFGAGEENRIQTDEIYRFLGNL 775
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16 Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 2 Query: 170 ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWV 478 +C GR+G+L+EA S I M I P VWG LL C+IHG EL AA + EL G + LSN A G W++ + RK+++ GV+KE G S V Sbjct: 793 VCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16 Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESV----WGALLTGCRIHGNTELAAYAADRVFELGIVSPGMN-VLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577 GR G L EA + T+S W LL C H +TEL + +V ++ S M+ VLLSN Y + GRW++ R+ + ++G+KK G SW+E GN+V TFV GD H R E+ + L L EM Sbjct: 485 GRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVS-KVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPRLEELSETLNCLQHEM 617 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |