CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580
            GRAG + +A  +IE MP+ P   V    L  CR  G  E+A   A+ + E+        V LS+ Y+   +WE+ A  +KM++++GVKK  G SW+E  N+V  F A DR +   ++IY  +++L +EM+
Sbjct:  557 GRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQ 686          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVE 481
            C     GRAGKL EA  +I+ M + P   VWGALL  CR HGN ELA  AA  + EL   + G  +LL++ YA AG WE   + +KM++ +  ++  G SWVE
Sbjct:  430 CMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRFRRFLGSSWVE 532          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP228_ARATH (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  161 KCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565
            K   C     GR G+L +A ++I           W ALL+ CR++ ++ +    A+R+ EL   + G  VLL N Y  +G    A + R+++RD+GVKKE  LSW+  GN+ H+F   D  H  ++ IY  LE +
Sbjct:  597 KHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLETM 731          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP212_ARATH (Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 2
Query:  194 RAGKLQEAISVIEK-MPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDR-CHVRTREIYQKLEELGEEME 580
            RAG+++EA  +++K MP+ P++S+WG++L+ CR   + E A  A   + +L     G  VLLSN YA  GRW  + K R+ + ++GVKK  G S V     +H FVA ++  H R  EI + L+ L  EM+
Sbjct:  517 RAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHV-RTREIYQKLEELGEEMEKAG 589
            GRAG+L+EA  V+E M + P   ++  LL  CR  GN  L    A++   L    P + +LL++ Y  +G+ E A K R ++ ++ + K+ G S VE   +VH+FV+ D   V +T  IY ++E + EE+++ G
Sbjct:  676 GRAGRLEEATGVVETMHLKPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFG 809          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFEL--GIV--SPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIY 547
            RAG+L +A+ +IEKMP+ P  SVWGALL GCR H N EL   A   + +L  G V       V LSN Y +  R  +A K R M+  +G++K  G S +E    V  FV+GD  H    +I+
Sbjct:  369 RAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIH 490          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 49/136 (36.03%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME--KAGY 592
            G AG L+EA ++I+ MP+     +W +LL+ CR  GN E+A  AA  + +L        VLLSNAYA+ G +E+A + R +++++ ++KE G S +E    VH F++    H ++ EIY  L+ L  ++   K+G+
Sbjct:  406 GGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLDILNWDVSTIKSGF 541          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565
            R+G L+EA   I++MP     SVWG+L+ GCRIH   ++     + + ++     G   LLSN YA  G WE+  + R  ++   +KK  G S +E   +V  F AG+   ++T EIY+ L  L
Sbjct:  652 RSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKVFRFGAGEENRIQTDEIYRFLGNL 775          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  170 ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWV 478
            +C     GR+G+L+EA S I  M I P   VWG LL  C+IHG  EL   AA +  EL     G  + LSN  A  G W++  + RK+++  GV+KE G S V
Sbjct:  793 VCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESV----WGALLTGCRIHGNTELAAYAADRVFELGIVSPGMN-VLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577
            GR G L EA  +        T+S     W  LL  C  H +TEL    + +V ++   S  M+ VLLSN Y + GRW++    R+ + ++G+KK  G SW+E GN+V TFV GD  H R  E+ + L  L  EM
Sbjct:  485 GRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVS-KVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPRLEELSETLNCLQHEM 617          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP255_ARATH2.575e-1736.15Putative pentatricopeptide repeat-containing prote... [more]
PP436_ARATH3.363e-1744.66Pentatricopeptide repeat-containing protein At5g59... [more]
PP228_ARATH5.737e-1734.81Pentatricopeptide repeat-containing protein At3g13... [more]
PP212_ARATH5.737e-1738.93Pentatricopeptide repeat-containing protein At3g04... [more]
PP430_ARATH1.278e-1635.07Pentatricopeptide repeat-containing protein At5g52... [more]
PP260_ARATH1.278e-1641.80Pentatricopeptide repeat-containing protein At3g28... [more]
PP200_ARATH2.847e-1636.03Pentatricopeptide repeat-containing protein At2g42... [more]
PP111_ARATH3.719e-1635.48Putative pentatricopeptide repeat-containing prote... [more]
PP121_ARATH4.857e-1641.75Pentatricopeptide repeat-containing protein At1g74... [more]
PP189_ARATH6.343e-1638.06Pentatricopeptide repeat-containing protein At2g36... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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