CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGD--EKNQTIRYHSERLAI 679 C GRAG ++EA ++ +MP+ P E V G+LL C +HG E+A + ++ + +L+SN Y A GR + A R LR +G++K GLS + + VH F +GDR H RT+EIY KL E+ E + AGYVPD S ++ +GD EK Q + HSE+LA+ Sbjct: 391 CMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAV 561
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKV-DGDEKNQTIRYHSERLAIA 682 R+ K+ +A I+ MPI P S+W ++L CR G+ E A + R+ EL PG ++L SNAYAA +W+ + RK L+D+ + K G SW+E G VH F +GD ++ IY+ LE L M K GY+PD V + + + +EK + I HSERLAIA Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIA 821
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28 Identity = 69/168 (41.07%), Postives = 100/168 (59.52%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVD----GDEKNQTIRYHSERLAIA 682 GRAGKL+EA I+ MP P W ALL CR H N LA AA+ + + ++ V+L+N YA A +WE+ A RK +R + ++K+ G SW+E + H FVA D H RE+ + LEE+ ++M+K GYV D + + K D GDE+ + +HSE+LA+A Sbjct: 494 GRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEE-MRLGHHSEKLAVA 660
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28 Identity = 73/207 (35.27%), Postives = 112/207 (54.11%), Query Frame = 2 Query: 74 IGFLRKCA-LGILECGMQC*LPAPSTRI*TKCL---ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 +G L C+ G+++ G +C CL C + GR+G+L +A+ +IE +P P+ +W A+L+ N E A +A+ + ++ VL+SN YA A +W + A RK +++ GVKKE GLSW+E VH F G H + I LE L + +AGYVPD + VL +D +EK++ + HSERLA+A Sbjct: 554 LGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALA 760
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28 Identity = 60/164 (36.59%), Postives = 99/164 (60.37%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG L+EA+ I+ +PI + +W L+ CR+ N EL AA + +L +PG +L+SN Y+ W+D A+ R + +G+K+ G S VE + H FV+ DR H + +EIY+ L ++ +++ GY PD + +L VD +EK + ++ HS+++AIA Sbjct: 382 GRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIA 545
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28 Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 2 Query: 170 ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 +C RAG L A I++MPI P VW LL+ C +H N E+ +AA + EL VLLSN YA + +W+ R+ ++++GVKKE G SW+E N +H+F GD+ H EI++ ++L + + GYV D +L ++ ++K+ I HSE+LAI+ Sbjct: 833 VCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAIS 1003
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28 Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 C GR+G ++EA S I MP+ P +WG+LL+G R+ G+ + A R+ EL ++ G VLLSN YA GRW + R + +G+ K G S+VE VH FV GD + IY L+E+ + + +AGYV DT VL ++ +K + YHSE+LAIA Sbjct: 343 CMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIA 512
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28 Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVL 616 C GRAG ++EA ++ KMP+ P VWGALL R+H + +A AA ++ EL + + LL N YA RW+D + R+ + D +KK G S +E H FVAGD+ H+++ EIY KLEEL +E A Y+PDTS +L Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELL 657
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28 Identity = 71/165 (43.03%), Postives = 99/165 (60.00%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEE-MEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG+L EA+ IE MP+ P +VWGALL C+IH N ++A A +V E + G VL+SN Y+ + E + R M+R++ +K+ G S+VE RVH F+AGDR H +T E+++ L+EL ME AG + G+E + T R HSERLAIA Sbjct: 405 GRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDR-------GEEVSSTTREHSERLAIA 562
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28 Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 2 Query: 158 TKCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTI 652 T+ C GRAG L+EA S I+ +P+ P +W ALL C HG+TE+ YAA+++F+ S ++L++N Y++ G+W++ AK K ++ GV KETG+S +E ++ H+FV D+ H + IY L L M GY PD F+L GD++N T+ Sbjct: 494 TEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL-CYTGDDRNGTV 657 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |