CF417623

Overview
NameCF417623
Unique NameCF417623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.076e-26
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + +K A A   GL  + CIGE L+EREAGKT +V  +QL +  DA  I ++ N VIAYEPVWAIGTG  A+P+QAQ+VHAA+R  L  +  A+VA   +++YGGSV  +N AEL
Sbjct:  109 LNRKFAAAQKSGLTPVLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLA-AKDAEVAQNVQLLYGGSVKAANAAEL 221

HSP 2 Score: 29.261 bits (64), Expect = 1.076e-26
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATI 414
            DIDG L+GGASL   EF  I
Sbjct:  226 DIDGGLIGGASLNADEFGAI 245
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.823e-26
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + +K A A + GL  + C+GE L+EREAG+T +V  +QL    D   + ++ + VIAYEPVWAIG+G  ATPEQAQEVHAA+RD L  S    +A   R++YGGSV   N AEL
Sbjct:  109 VSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSVKADNAAEL 221

HSP 2 Score: 31.5722 bits (70), Expect = 1.823e-26
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATI 414
            DIDG LVGGASLK  EF  I
Sbjct:  226 DIDGGLVGGASLKADEFGAI 245
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_PHOLL (Triosephosphate isomerase OS=Photorhabdus luminescens subsp. laumondii GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.373e-26
Identity = 59/118 (50.00%), Postives = 72/118 (61.02%), Query Frame = 3 
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            FI KK A    +GL  + CIGE  QE EAG+T  VC +Q+ A  +   + ++   VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN  N AEL  Q
Sbjct:  108 FIAKKFAILKQQGLIPVLCIGETEQENEAGQTESVCARQIDAVLNTLGVAAFQGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAQK-DAAIAQQIIIQYGGSVNADNAAELFSQ 224

HSP 2 Score: 35.8094 bits (81), Expect = 2.373e-26
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 1 
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            L ++ DIDG LVGGASLK   FA IV +  + K A
Sbjct:  221 LFSQPDIDGALVGGASLKANAFAVIVKAAAAAKKA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALNS (Triosephosphate isomerase OS=Salmonella newport (strain SL254) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255
The following BLAST results are available for this feature:
BLAST of CF417623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEPW1.076e-2652.63Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEU51.823e-2650.88Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_PHOLL2.373e-2650.00Triosephosphate isomerase OS=Photorhabdus luminesc... [more]
TPIS_SALTY3.089e-2650.43Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALSV3.089e-2650.43Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK3.089e-2650.43Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB3.089e-2650.43Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA3.089e-2650.43Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALNS3.089e-2650.43Triosephosphate isomerase OS=Salmonella newport (s... [more]
TPIS_SALHS3.089e-2650.43Triosephosphate isomerase OS=Salmonella heidelberg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-553 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417623 ID=CF417623; Name=CF417623; organism=Citrus sinensis; type=EST; length=665bp
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTC
ATAGCTTGTATCGGGGAACAGTTGCAAGAAAGAGAAGCAGGGAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGTT
GGGATAATGTAGTCATTGCATATGAGCCCGTTTGGGCTATTGGAACTGGT
AAAGTGGCCACCCCTGAGCAGGCTCAGGAAGTACATGCTGCTCTTCGTGA
TTGGCTTAAAAACAGTGTCTCAGCAGACGTTGCCACTAAAACACGTATTA
TCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTGCAAAACAA
GAGGGATATTGATGGTTTTCTGGTTGGTGGTGCTTCCTTGAAGGGCCCAG
AGTTTGCCACCATTGTCAATTCCGTAACATCCAAGAAAGTAGCTGCGTGA
TGTATAAACCTGTTTTGTCAAGATCAACCAATAATGGGCTAAGAGAATCT
ATATCAGTTTAAAGCTAATTATCGTAACCAGCCTATGCCCTTGCTATGTT
CAACGAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTCCCCNAACAATC
GGAGGTTCCTTCTGTTTCTCTATTGTGGGCTGAACTTGTTTGATACCGGA
CAGGAGAACAATATA
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