CF417623 | Citrus Genome Database

Overview


Name	CF417623
Unique Name	CF417623
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	665

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.089e-26
Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 3.089e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.812e-26
Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++ VVIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN  N AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNAGNAAELFTQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 6.812e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKKA 255

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.814e-26
Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + +K A A   GL  + CIGE L EREAG+T  V  +QL +  DA  I ++ N VIAYEPVWAIGTG  A+P+QAQ+VHAA+R  L  ++ A+VA   +++YGGSV  +N AEL
Sbjct:  109 LNQKFAAAQKSGLTPVLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLA-AMDAEVAANVQLLYGGSVKAANAAEL 221

HSP 2 Score: 29.261 bits (64), Expect = 6.814e-26
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATI 414
            DIDG L+GGASL   EF  I
Sbjct:  226 DIDGGLIGGASLNADEFGAI 245

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.814e-26
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + KK   ALS  L VI C+GE L++RE+G T  V   Q++     + + D  +VVIAYEPVWAIGTGK ATPEQAQEVHA +R  +K+    +VA + RI YGGSV  SN  EL
Sbjct:  110 VNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKEL 223

HSP 2 Score: 30.4166 bits (67), Expect = 6.814e-26
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNS 423
            DIDG L+GGASL   +F  I+ S
Sbjct:  228 DIDGGLIGGASLNAEDFVEIIKS 250

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_DELAS (Triosephosphate isomerase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.816e-26
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN-VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            +  KA  AL++G+  I C+GE L EREAG+T +V  +QL A    +    N +V+AYEPVWAIGTG+ ATPEQAQ+VHA LR  L  + ++  A +  ++YGGS+N SN A+L  Q
Sbjct:  109 VALKAQAALAKGVTPIVCVGETLAEREAGQTEEVVKRQLAAVIHQVGQCINELVVAYEPVWAIGTGRTATPEQAQQVHAVLRAQL--AAASQQADRIALLYGGSMNASNAAQLLAQ 222

HSP 2 Score: 33.113 bits (74), Expect = 6.816e-26
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIV 417
            DIDG LVGGASLK  +F TI+
Sbjct:  224 DIDGGLVGGASLKAADFLTII 244

BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.867e-26
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 3

Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A    +GL  + CIGE   E EAGKT +VC +Q+          +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +  +  A +A +  I YGGSVN SN AEL  Q
Sbjct:  109 IAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDTVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKIAEQVIIQYGGSVNASNAAELFAQ 224

HSP 2 Score: 35.4242 bits (80), Expect = 8.867e-26
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAVIVKAAEAAKQA 255

The following BLAST results are available for this feature:

BLAST of CF417623 vs. ExPASy Swiss-Prot

BLAST of CF417623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
TPIS_SALG2	3.089e-26	50.43	Triosephosphate isomerase OS=Salmonella gallinarum...	[more]
TPIS_SALEP	3.089e-26	50.43	Triosephosphate isomerase OS=Salmonella enteritidi...	[more]
TPIS_SALDC	3.089e-26	50.43	Triosephosphate isomerase OS=Salmonella dublin (st...	[more]
TPIS_SALCH	3.089e-26	50.43	Triosephosphate isomerase OS=Salmonella choleraesu...	[more]
TPIS_SALA4	3.089e-26	50.43	Triosephosphate isomerase OS=Salmonella agona (str...	[more]
TPIS_KLEPN	6.812e-26	50.43	Triosephosphate isomerase OS=Klebsiella pneumoniae...	[more]
TPIS_PSEE4	6.814e-26	51.75	Triosephosphate isomerase OS=Pseudomonas entomophi...	[more]
TPIS_CHLT3	6.814e-26	52.63	Triosephosphate isomerase OS=Chloroherpeton thalas...	[more]
TPIS_DELAS	6.816e-26	49.14	Triosephosphate isomerase OS=Delftia acidovorans (...	[more]
TPIS_SALTI	8.867e-26	49.57	Triosephosphate isomerase OS=Salmonella typhi GN=t...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-553 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417623 ID=CF417623; Name=CF417623; organism=Citrus sinensis; type=EST; length=665bp
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTC
ATAGCTTGTATCGGGGAACAGTTGCAAGAAAGAGAAGCAGGGAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGTT
GGGATAATGTAGTCATTGCATATGAGCCCGTTTGGGCTATTGGAACTGGT
AAAGTGGCCACCCCTGAGCAGGCTCAGGAAGTACATGCTGCTCTTCGTGA
TTGGCTTAAAAACAGTGTCTCAGCAGACGTTGCCACTAAAACACGTATTA
TCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTGCAAAACAA
GAGGGATATTGATGGTTTTCTGGTTGGTGGTGCTTCCTTGAAGGGCCCAG
AGTTTGCCACCATTGTCAATTCCGTAACATCCAAGAAAGTAGCTGCGTGA
TGTATAAACCTGTTTTGTCAAGATCAACCAATAATGGGCTAAGAGAATCT
ATATCAGTTTAAAGCTAATTATCGTAACCAGCCTATGCCCTTGCTATGTT
CAACGAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTCCCCNAACAATC
GGAGGTTCCTTCTGTTTCTCTATTGTGGGCTGAACTTGTTTGATACCGGA
CAGGAGAACAATATA