CF417623

Overview
NameCF417623
Unique NameCF417623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.154e-25
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 3
Query:   33 SEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            + GL  + CIGE L+ERE  KTF+V   QLKA  D   I + +N VIAYEPVWAIGTGKVA+ EQAQ+VHA +R WL    S  VA K +I+YGGSV  S+  EL  Q
Sbjct:  118 ANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQ 224          

HSP 2 Score: 26.9498 bits (58), Expect = 1.154e-25
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  355 DIDGFLVGGASLKGPEFATIV 417
            DIDG LVGGA+L   EF  I+
Sbjct:  226 DIDGGLVGGAALLVEEFVGII 246          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.155e-25
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + +K  +ALSEGL VI C GE L++RE G T DV   Q++     I    N+VIAYEPVWAIGTGK AT EQA+EVH  +R+ + +    + A + RI YGGSV  SN  EL
Sbjct:  109 VNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKEL 220          

HSP 2 Score: 28.1054 bits (61), Expect = 1.155e-25
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  355 DIDGFLVGGASLKGPEFATIVNS 423
            +IDG L+GGASL   +F  IV +
Sbjct:  225 NIDGGLIGGASLNAADFVAIVKA 247          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.503e-25
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + +K   ALS GL  I C+GE L++REAG+T +V  +Q+ A   +I   D   +V+AYEPVWAIGTGK ATPE AQEVH  LR  L ++ +A  AT+ RI+YGGS+   N  EL
Sbjct:  108 VAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRL-HAKNAQAATEVRILYGGSMKPDNAKEL 220          

HSP 2 Score: 30.0314 bits (66), Expect = 1.503e-25
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  355 DIDGFLVGGASLKGPEFATIVNS 423
            DIDG L+GGA+LK  +F  I+ +
Sbjct:  225 DIDGGLIGGAALKAADFLAIIRA 247          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_THEP3 (Triosephosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-25
Identity = 56/114 (49.12%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            + KK   ALS GL  I C+GE L +RE GKTF+V   Q K     +   D  NVVIAYEP+WAIGTGK AT + A EV  ALR+ + +    + A+  RI YGGSV   N +EL
Sbjct:  108 VNKKVLSALSHGLSPIVCVGESLSQREEGKTFEVVLNQTKEALKGVSHDDIVNVVIAYEPIWAIGTGKTATAKDANEVIKALRNTIASLYGKEKASLVRIQYGGSVKPENISEL 221          

HSP 2 Score: 34.2686 bits (77), Expect = 1.503e-25
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  331 VLNLQNKRDIDGFLVGGASLKGPEFATIVN 420
            +  L  + DIDG LVGGASL   +FA IVN
Sbjct:  218 ISELMAESDIDGALVGGASLVASDFAKIVN 247          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.955e-25
Identity = 60/117 (51.28%), Postives = 70/117 (59.83%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            I KK A     GL  + CIGE   E EAGKT +VC +Q+ A  +     ++  VVIAYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  Q
Sbjct:  109 IAKKFAVLKQTGLIPVLCIGETEAENEAGKTEEVCARQIDAVLNTQGADAFKGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKK-DATVAAQVIIQYGGSVNDKNAAELFAQ 224          

HSP 2 Score: 35.8094 bits (81), Expect = 1.955e-25
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            DIDG LVGGASLK   FA IV +  + K A
Sbjct:  226 DIDGALVGGASLKADAFAAIVKAAAAAKKA 255          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.545e-25
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLK--AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAEL 341
            I  K   AL   + VI C GE+L++R++G  F++   QL+   +  A  SW  +V+AYEPVWAIGTG+ A+PEQAQE+H  +R+ ++ +  A++A +  I+YGGSV   N  E+
Sbjct:  109 IANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEI 222          

HSP 2 Score: 32.7278 bits (73), Expect = 2.545e-25
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  346 NKRDIDGFLVGGASLKGPEFATIVNSV 426
            +K D+DG L+GGA+LK  +F  IV ++
Sbjct:  224 SKPDVDGGLIGGAALKADDFLAIVTAI 250          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_HAEDU (Triosephosphate isomerase OS=Haemophilus ducreyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.311e-25
Identity = 58/118 (49.15%), Postives = 74/118 (62.71%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            FI KK A   + GL  + CIGE   E EAG+T  VC +Q+ A  ++  + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q
Sbjct:  110 FIAKKFAALKTAGLTPVLCIGETEAENEAGQTQQVCARQIDAIINSLGVEAFNQAVIAYEPIWAIGTGKSATPAQAQAVHAFIRQHIAEKSQA-VADQLIIQYGGSVNDTNAAELFSQ 226          

HSP 2 Score: 34.2686 bits (77), Expect = 3.311e-25
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 1
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIVNSVTSKK 438
            L ++ DIDG LVGGASLK   FA IV +    K
Sbjct:  223 LFSQPDIDGALVGGASLKATAFAEIVKAAEKAK 255          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_GEOBB (Triosephosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.313e-25
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSN 329
            + KK   AL   L  I CIGE L+ REAG TF V  +QLK   + +    +  V++AYEPVWAIGTGKVA+ +QAQE HA +R  +        A K RI+YGGSV   N
Sbjct:  109 VNKKVKAALKGALVPIVCIGETLEAREAGDTFKVLERQLKGGLEGLTGTQFAPVIVAYEPVWAIGTGKVASDDQAQEAHAFIRGVIAGLFGKSAADKVRILYGGSVKPDN 218          

HSP 2 Score: 38.5058 bits (88), Expect = 3.313e-25
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  331 VLNLQNKRDIDGFLVGGASLKGPEFATIV 417
            V  L ++ DIDG LVGGASLKG  FA+IV
Sbjct:  219 VKGLMSRPDIDGALVGGASLKGASFASIV 247          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.311e-25
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 3
Query:    6 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS----WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            + +K A A  +GL  I C+GE L++REA +T  V  QQL A    +P+       +V+AYEPVWAIGTGKVA+  QAQE HA +R  L   + A+VA   RI+YGGS+   N  EL  Q
Sbjct:  110 VAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQ 228          

HSP 2 Score: 31.9574 bits (71), Expect = 4.311e-25
Identity = 13/31 (41.94%), Postives = 22/31 (70.97%), Query Frame = 1
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIVNSVTS 432
            L  + D+DG L+GGA+LK  +F  I++ +T+
Sbjct:  225 LLGQADVDGGLIGGAALKANDFLAIMDGLTA 255          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.312e-25
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            FI +K    +  GL  I CIGE L+EREA KTFDV  +Q++   + + +   + +V+AYEPVWAIGTGK AT  QAQ+ H+ +R  + +   + VA + RI+YGGSV   N   L +Q
Sbjct:  108 FINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQ 225          

HSP 2 Score: 30.0314 bits (66), Expect = 4.312e-25
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIV 417
            L  + DIDG LVGGASL   +F  IV
Sbjct:  222 LLQQPDIDGALVGGASLNAEDFIRIV 247          
The following BLAST results are available for this feature:
BLAST of CF417623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSYIN1.154e-2556.48Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_CHLPD1.155e-2550.89Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_HERAR1.503e-2550.88Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_THEP31.503e-2549.12Triosephosphate isomerase OS=Thermoanaerobacter ps... [more]
TPIS_ERWT91.955e-2551.28Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_FLAJ12.545e-2542.98Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_HAEDU3.311e-2549.15Triosephosphate isomerase OS=Haemophilus ducreyi G... [more]
TPIS_GEOBB3.313e-2548.18Triosephosphate isomerase OS=Geobacter bemidjiensi... [more]
TPIS_MAGSM4.311e-2547.06Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_PELCD4.312e-2544.92Triosephosphate isomerase OS=Pelobacter carbinolic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-553 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417623 ID=CF417623; Name=CF417623; organism=Citrus sinensis; type=EST; length=665bp
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTC
ATAGCTTGTATCGGGGAACAGTTGCAAGAAAGAGAAGCAGGGAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGTT
GGGATAATGTAGTCATTGCATATGAGCCCGTTTGGGCTATTGGAACTGGT
AAAGTGGCCACCCCTGAGCAGGCTCAGGAAGTACATGCTGCTCTTCGTGA
TTGGCTTAAAAACAGTGTCTCAGCAGACGTTGCCACTAAAACACGTATTA
TCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTGCAAAACAA
GAGGGATATTGATGGTTTTCTGGTTGGTGGTGCTTCCTTGAAGGGCCCAG
AGTTTGCCACCATTGTCAATTCCGTAACATCCAAGAAAGTAGCTGCGTGA
TGTATAAACCTGTTTTGTCAAGATCAACCAATAATGGGCTAAGAGAATCT
ATATCAGTTTAAAGCTAATTATCGTAACCAGCCTATGCCCTTGCTATGTT
CAACGAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTCCCCNAACAATC
GGAGGTTCCTTCTGTTTCTCTATTGTGGGCTGAACTTGTTTGATACCGGA
CAGGAGAACAATATA
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