CF417639 | Citrus Genome Database

Overview


Name	CF417639
Unique Name	CF417639
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	587

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.633e-68
Identity = 86/114 (75.44%), Postives = 97/114 (85.09%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 114

HSP 2 Score: 97.4413 bits (241), Expect = 2.633e-68
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 2

Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKV+ V  G K +PY+ T+DGRTIRYPDPLIK  D+I+LD+   KI DFI  + GN+ M+TGGRN
Sbjct:  117 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 188

BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.633e-68
Identity = 86/114 (75.44%), Postives = 95/114 (83.33%), Query Frame = 1

Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + VDGKVRTD TYPAGFMDV+SI KT ENFRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRI 114

HSP 2 Score: 100.138 bits (248), Expect = 2.633e-68
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 2

Query:  365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            +EEAK+ LCKV+ +  G KGIP++ T+D RTIRYPDP+IKA DT+++DL   KIT+FI  D GN+ MVTGG N
Sbjct:  116 NEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGAN 188

The following BLAST results are available for this feature:

BLAST of CF417639 vs. ExPASy Swiss-Prot

BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97


Match Name	E-value	Identity	Description
RS4_BOVIN	5.354e-69	75.44	40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=...	[more]
RS4X_RAT	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Rattus norv...	[more]
RS4X_MOUSE	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Mus musculu...	[more]
RS4X_MESAU	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Mesocricetu...	[more]
RS4X_MACFU	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Macaca fusc...	[more]
RS4X_HUMAN	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Homo sapien...	[more]
RS4X_FELCA	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Felis catus...	[more]
RS4X_CERAE	5.354e-69	75.44	40S ribosomal protein S4, X isoform OS=Cercopithec...	[more]
RS4_BOMMO	2.633e-68	75.44	40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE...	[more]
RS4_ICTPU	2.633e-68	75.44	40S ribosomal protein S4 OS=Ictalurus punctatus GN...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-569 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bp
AGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAG
GCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTG
CACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTG
ATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGT
TATTGCTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGA
CAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAG
ACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCT
CCATTCCCTCAGAGGATGAGGAGGCAAAATTCNAGCTTTGCAAAGTTAGA
TCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGG
GCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCNATGATACCATCA
AACTTGACTTANAAGAGAACAAGATCACTGACTTCATCNAGNTTGATGTT
GGGAATATTGTCATGGTCACTGGGGGTAGAAACAGAG