CF417639
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 4.875e-94 Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++++RNRLKYALTYREVI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 115 HSP 2 Score: 135.576 bits (340), Expect = 4.875e-94 Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 2 Query: 365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 DEE+KF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKA DTIKLDL NKI DFI DVGN+VMVTGGRNR Sbjct: 116 DEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR 189
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 6.359e-94 Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +R Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIR 115 HSP 2 Score: 134.42 bits (337), Expect = 6.359e-94 Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 356 PSEDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 P DE+AKF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKA DTIK+DL NKI DFI DVGN+VMVTGGRN Sbjct: 113 PIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 229.18 bits (583), Expect = 6.360e-94 Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++ Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIK 115 HSP 2 Score: 135.191 bits (339), Expect = 6.360e-94 Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 2 Query: 362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 +DEEAKF LCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK DTIKLDL ENKI +FI DVGN+VMVTGGRNR Sbjct: 115 KDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 6.360e-94 Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++ Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIK 115 HSP 2 Score: 135.191 bits (339), Expect = 6.360e-94 Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 2 Query: 362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 +DEEAKF LCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK DTIKLDL ENKI +FI DVGN+VMVTGGRNR Sbjct: 115 KDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2) HSP 1 Score: 229.18 bits (583), Expect = 3.135e-93 Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++ Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIK 115 HSP 2 Score: 132.88 bits (333), Expect = 3.135e-93 Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 2 Query: 362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 +DEEAKF LCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK DTIKLDL NKI +FI DVGN+VMVTGGRNR Sbjct: 115 KDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNR 189
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 2.630e-92 Identity = 108/116 (93.10%), Postives = 114/116 (98.28%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRG 366 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREVIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++ G Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITG 116 HSP 2 Score: 131.724 bits (330), Expect = 2.630e-92 Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 +E KF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKA DTIKLDL NKI DFI DVGN+VMVTGGRNR Sbjct: 117 DETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR 189
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3) HSP 1 Score: 224.942 bits (572), Expect = 9.935e-92 Identity = 106/115 (92.17%), Postives = 113/115 (98.26%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++ Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVK 115 HSP 2 Score: 132.109 bits (331), Expect = 9.935e-92 Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 2 Query: 362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 +DE+AKF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKA DTIK+DL NKI DFI DVGN+VMVTGGRN Sbjct: 115 KDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.193e-86 Identity = 98/115 (85.22%), Postives = 105/115 (91.30%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREV++ILMQRH+LVDGK+ + DVVSIPKTNENFRLLYDTKGRFRLHS+R Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIR 111 HSP 2 Score: 137.887 bits (346), Expect = 1.193e-86 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 2 Query: 365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 DEE+KF LCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKA DTIKLDL NKITDFI DVGN+VMVTGGRNR Sbjct: 112 DEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNR 185
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3) HSP 1 Score: 178.718 bits (452), Expect = 4.105e-69 Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL REV AILMQRHV VDGKVRTD TYPAGFMDV+++ TNENFRL+YD KGRF +H + Sbjct: 1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRI 114 HSP 2 Score: 102.834 bits (255), Expect = 4.105e-69 Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 2 Query: 365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 DEEA + L KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK DT+K+DL KITDFI D G +V VTGGRN Sbjct: 116 DEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69 Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114 HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69 Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDPLIK DTI++DL KITDFI D GN+ MVTGG N Sbjct: 117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188 The following BLAST results are available for this feature:
BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bpback to top |